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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKSASSFLDTFEGYFDQRKIVRTNAKSRHTMSMAPDVTREEFSLVSNFFNENFQKRPRQKLFEIQKKMFPQYWFELTQGF
SLLFYGVGSKRNFLEEFAIDYLSPKIAYSQLVNSIPCLILNGYNPSCNYRDVFKEITDLLVPAELTRSETKYWGNHVILQ
IQKMIDFYKNQPLDIKLILVVHNLDGPSIRKNTFQTMLSFLSVIRQIAIVASTDHIYAPLLWDNMKAQNYNFVFHDISNF
EPSTVESTFQDVMK

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zr1:B 374 251 0.9882 0.6711 1.0000 0.0 7mca:B, 6rqc:B, 7tjf:B, 7tjh:B, 7tji:B, 7tjj:B, 7tjk:B, 5v8f:B
2 6wgi:B 325 229 0.8898 0.6954 0.9869 1.84e-168
3 7jk2:B 285 205 0.2323 0.2070 0.2878 2.39e-23
4 7jps:B 199 189 0.2047 0.2613 0.2751 2.85e-23
5 2aaz:A 305 41 0.0669 0.0557 0.4146 0.71 2aaz:B, 2aaz:C, 2aaz:D, 2aaz:E, 2aaz:F, 2aaz:G, 2aaz:H, 2aaz:I, 2aaz:J, 2aaz:K, 2aaz:L, 2aaz:M, 2aaz:N, 2aaz:O, 2aaz:P
6 3k4y:A 260 30 0.0551 0.0538 0.4667 1.3 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
7 7oya:11 138 55 0.0551 0.1014 0.2545 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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