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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA
LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR
DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS
RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF
LEVVAESLGLKKLRVVETGGREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHAMTCPI
VRDPID

The query sequence (length=406) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a9g:D 406 406 1.0000 1.0000 1.0000 0.0 2a9g:A, 2a9g:B, 2a9g:C
2 1lxy:A 409 426 0.2956 0.2934 0.2817 4.11e-48 1lxy:B, 1s9r:A, 1s9r:B
3 1h70:A 255 183 0.0911 0.1451 0.2022 0.10 3bpb:A, 3bpb:B, 3rhy:A, 3rhy:B
4 5epe:A 248 77 0.0640 0.1048 0.3377 1.4
5 3ff6:A 750 31 0.0369 0.0200 0.4839 5.2 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A
6 7lt5:B 576 43 0.0394 0.0278 0.3721 5.2 8cxs:A, 8cxs:B, 8cxs:C, 8cxt:A, 8cxt:B, 8cxt:C, 8cxu:A, 8cxu:B, 8cxu:C, 8cxv:A, 8cxv:B, 8cxv:C, 8cxw:A, 8cxw:B, 8cxw:C, 8cxx:A, 8cxx:B, 8cxx:C, 8cxy:A, 8cxy:B, 8cxy:C, 8cxz:A, 8cxz:B, 8cxz:C, 8cy0:A, 8cy0:B, 8cy0:C, 8cy1:A, 8cy1:B, 8cy1:C, 8cy2:A, 8cy2:B, 8cy2:C, 8cy3:A, 8cy3:B, 8cy3:C, 8cy4:A, 8cy4:B, 8cy4:C, 8cy5:A, 8cy5:B, 8cy5:C, 8fs1:A, 8fs1:B, 8fs1:C, 8fs2:A, 8fs2:B, 8fs2:C, 7lni:A, 7lni:B, 7lni:C, 7lnj:A, 7lnj:B, 7lnj:C, 7lt5:A, 7lt5:C, 7rfk:A, 7rfk:B, 7rfk:C, 7rfl:A, 7rfl:B, 7rfl:C, 7rfm:A, 7rfm:B, 7rfm:C, 7rfn:A, 7rfn:B, 7rfn:C, 8vpg:A, 8vpg:B, 8vpg:C, 8vph:A, 8vph:B, 8vph:C, 8vpi:A, 8vpi:B, 8vpi:C
7 1dk4:A 252 68 0.0468 0.0754 0.2794 6.2 1dk4:B, 1g0h:A, 1g0h:B, 1g0i:A, 1g0i:B
8 8cp2:A 600 37 0.0369 0.0250 0.4054 7.5 8cp2:B, 8cp5:A, 8cp5:B
9 3mdj:C 819 26 0.0296 0.0147 0.4615 9.5 3mdj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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