Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
THHHHHHGSMHYKAQLQKLLTTEEKKILARLSTPQKIQDFLDTIKNKDLAEHTMWSPRAVLKHKHAHCMEGAMLAALALA
YHGHSPLLMDLQTTDEDEDHVVALFKIDGHWGAISKTNHPVLRYRDPIYKSVRELAMSYFHEYFIWWTKKNGGKKTLRAY
SNPFDLTRYKPERWVIATGDLDWLAEALDDSKHFPILNKKMQKQLRPASRIETKAASLSEWP

The query sequence (length=222) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ob6:A 222 222 1.0000 1.0000 1.0000 1.83e-167
2 2c0a:B 214 62 0.0901 0.0935 0.3226 0.034 2c0a:C, 1eua:A, 1eua:B, 1eua:C, 1wau:A, 1wbh:B, 1wbh:C
3 7zve:E 500 80 0.0991 0.0440 0.2750 0.54 2bh9:A, 2bhl:A, 2bhl:B, 6e07:L, 6e07:C, 6e07:F, 6e07:N, 6e07:Q, 6e07:T, 6e07:W, 6e07:B, 6e08:L, 6jyu:A, 1qki:A, 1qki:B, 1qki:C, 1qki:D, 1qki:E, 1qki:F, 1qki:G, 1qki:H, 7snh:A, 7snh:B, 7snh:C, 7snh:D, 7sni:A, 7sni:B, 7sni:C, 7sni:D, 7ual:A, 7ual:B, 7ual:C, 7ual:D, 7uc2:A, 7uc2:B, 7uc2:C, 7uc2:D, 5ukw:A, 7zvd:N
4 7ror:B 362 79 0.0946 0.0580 0.2658 0.58 7ror:A, 7ros:A, 7ros:B, 7rot:A, 7rot:B, 3vgj:A, 3vgj:B
5 7seh:B 443 80 0.0991 0.0497 0.2750 0.59 7seh:A, 7sei:A, 6va0:A, 6va7:A, 6va8:A, 6va9:A, 6vaq:A
6 7sc6:A 349 41 0.0495 0.0315 0.2683 1.3 7scq:A, 7scq:B
7 8jo2:H 219 143 0.1802 0.1826 0.2797 1.4 8jo2:I, 4s04:A, 4s04:B, 4s04:E, 4s04:F, 4s05:A, 4s05:B, 3w9s:A, 3w9s:B
8 6j7b:A 249 48 0.0541 0.0482 0.2500 1.6 6j4u:A, 6j8f:B, 6j8n:B, 6j8n:D, 6j8o:B, 6j91:B, 6j9h:B, 6j9h:D, 6k81:A, 6lpg:A, 6nvq:C, 6ocg:A, 6och:A, 6och:C
9 3i39:X 635 138 0.1486 0.0520 0.2391 2.0 3b51:X, 3b52:X, 3b53:X, 7err:A, 5fle:X, 8omx:X, 8omy:X, 8on0:X, 8on1:X, 8on2:X, 8on3:X, 1su6:A, 1su7:A, 1su8:A, 1suf:A, 4udx:X, 4udy:X, 8x9d:A, 8x9e:A, 8x9f:A, 8x9g:A, 8x9h:A, 7xdm:A, 7xdn:A, 7xdp:A, 2yiv:X, 7zx3:X, 7zx5:X, 7zx6:X, 7zxc:X, 7zxj:X, 7zxl:X, 7zxx:X, 7zy1:X
10 8gr9:A 432 34 0.0586 0.0301 0.3824 3.9
11 6m4p:A 378 32 0.0631 0.0370 0.4375 5.0 6m4p:B, 6m4q:A
12 4nj5:A 482 124 0.1486 0.0685 0.2661 7.9
13 5h7l:A 694 30 0.0495 0.0159 0.3667 9.7 5h7k:A, 5h7l:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218