Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TDRFKGDDDIPYKERLFERQQGKRAINYQILKNKGLTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRAVYSGGQSGVYEGE
KTGIKKGLTRSVKFK

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d4i:5H 95 95 1.0000 1.0000 1.0000 2.63e-63
2 7aju:UC 86 95 0.8842 0.9767 0.8842 7.91e-51 6zqd:UC, 6zqe:UC
3 7suk:NB 142 141 0.9263 0.6197 0.6241 3.55e-47 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
4 5oql:C 74 74 0.4842 0.6216 0.6216 2.03e-18 6rxt:UC, 6rxu:UC, 6rxv:UC, 6rxx:UC, 6rxy:UC, 6rxz:UC
5 7mqa:NB 103 75 0.3789 0.3495 0.4800 9.96e-14 7mq8:NB, 7mq9:NB
6 4typ:C 190 57 0.2000 0.1000 0.3333 0.12 4typ:D
7 6zu5:SD0 213 85 0.2421 0.1080 0.2706 1.5
8 4wz9:B 887 20 0.0947 0.0101 0.4500 3.8 4wz9:A
9 7ri3:C 583 50 0.1368 0.0223 0.2600 8.1 7ri3:A, 7ri3:B, 7ri3:D
10 7wvt:A 364 25 0.0947 0.0247 0.3600 10.0 7wwd:A, 7wwg:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218