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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDQIAKNVKLDDFIPKRQSNFELSVPLPTKAEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTANLLLNNSHHIEVVS
KQMDPLLPRFVGKKARKVVAPTENDEVVPVLHMDPNEWKIPAAVSNWKNPNGYTVALERRVTINDGFMKLSEALENADKK
ARQEIRSKME

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bk8:E 186 171 0.9882 0.9032 0.9825 1.09e-117
2 5mps:K 187 188 0.9882 0.8984 0.8936 7.90e-116 7b9v:K, 5mq0:K
3 7dco:P 246 168 0.9294 0.6423 0.9405 7.15e-111 6exn:K, 5gm6:P, 5gmk:P, 6j6g:P, 6j6h:P, 6j6n:P, 6j6q:P, 5lj3:K, 5lj5:K, 5lqw:M, 5wsg:P, 5y88:Q, 5ylz:Q
4 3jb9:M 207 190 0.3529 0.2899 0.3158 1.90e-21
5 8ro0:R 282 156 0.2824 0.1702 0.3077 3.60e-16 8ro1:R
6 8i0u:R 380 191 0.3588 0.1605 0.3194 2.27e-15 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
7 6ff4:C 286 198 0.3588 0.2133 0.3081 5.98e-15 6ff7:C
8 9fmd:R 328 198 0.3588 0.1860 0.3081 1.19e-14 8ro2:R
9 7aav:v 206 159 0.3000 0.2476 0.3208 1.47e-09 7abi:v
10 8ch6:Y 306 176 0.3176 0.1765 0.3068 5.06e-09 7qtt:Y
11 7dvq:R 241 102 0.2176 0.1535 0.3627 2.67e-07
12 4zla:A 485 32 0.0765 0.0268 0.4062 1.5 4zi6:A, 4zi6:B, 4zi6:C, 4zi6:D, 4zi6:E, 4zi6:F, 4zla:B, 4zla:C, 4zla:D, 4zla:E, 4zla:F
13 6qv4:A 1666 63 0.1412 0.0144 0.3810 3.5 6qv3:A
14 1vp4:A 420 56 0.1176 0.0476 0.3571 5.3 1vp4:B
15 3fwz:A 140 58 0.1000 0.1214 0.2931 8.7 3fwz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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