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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAQDVRQLSYEQVKGTGLANRCPEVVSSKGKISLDKTKKYKVVDLCLEPKQFLVEEEEFVDTKLMTRATYTLANIEGELV
NENGTWKFIEKDGMDYAATTVQIPGGERVPFLFSIKKLVASLNISTSTELGGEFKVPSYRTGMFLDPKGRGMANGYDMAV
ALPALEADGAVGQEVLRKENDKVFQETSGRIELAVNKVDPTSNEIGGVFVSEQLSDTDMGAKEPKKLLLKGVFYARILPS

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yuu:o2 245 245 1.0000 0.9796 0.9796 2.31e-174 4yuu:O1
2 5v2c:O 245 248 0.5167 0.5061 0.5000 6.93e-79 5b5e:O, 5b5e:o, 5b66:O, 5b66:o, 7cji:O, 7cji:o, 7cjj:O, 7cjj:o, 7cou:O, 7cou:o, 5e79:O, 5e79:o, 5e7c:O, 5e7c:o, 4fby:O, 4fby:f, 8gn0:O, 8gn0:o, 8gn1:O, 8gn1:o, 8gn2:O, 8gn2:o, 5gth:O, 5gth:o, 5gti:O, 5gti:o, 5h2f:O, 5h2f:o, 8ir5:O, 8ir5:o, 8ir6:O, 8ir6:o, 8ir7:O, 8ir7:o, 8ir8:O, 8ir8:o, 8ir9:O, 8ir9:o, 8ira:O, 8ira:o, 8irb:O, 8irb:o, 8irc:O, 8irc:o, 8ird:O, 8ird:o, 8ire:O, 8ire:o, 8irf:O, 8irf:o, 8irg:O, 8irg:o, 8irh:O, 8irh:o, 8iri:O, 8iri:o, 4ixq:O, 4ixq:o, 4ixr:O, 4ixr:o, 6jlj:O, 6jlj:o, 6jlk:O, 6jlk:o, 6jll:O, 6jll:o, 6jlm:O, 6jlm:o, 6jln:O, 6jln:o, 6jlo:O, 6jlo:o, 6jlp:O, 6jlp:o, 3kzi:O, 4pbu:O, 4pbu:o, 4rvy:O, 4rvy:o, 4tnh:O, 4tnh:o, 4tni:O, 4tni:o, 4tnj:O, 4tnj:o, 4tnk:O, 4tnk:o, 4ub6:O, 4ub6:o, 4ub8:O, 4ub8:o, 5v2c:o, 4v62:AO, 4v62:BO, 4v82:BO, 5ws5:O, 5ws5:o, 5ws6:O, 5ws6:o, 3wu2:O, 3wu2:o, 7yq2:O, 7yq2:o, 7yq7:O, 7yq7:o, 5zzn:O, 5zzn:o
3 7oui:o 197 241 0.4000 0.4873 0.3983 5.71e-43 7oui:O
4 5g38:A 172 227 0.3500 0.4884 0.3700 1.48e-36 5g39:A, 5g3a:A
5 1lw7:A 344 49 0.0833 0.0581 0.4082 0.007
6 6ke6:RP 2052 67 0.0833 0.0097 0.2985 1.9
7 4bas:A 172 29 0.0583 0.0814 0.4828 3.1
8 6psm:C 448 145 0.1583 0.0848 0.2621 3.4 6prm:A, 6prm:B, 6prm:C, 6prm:D, 6psm:A, 6psm:B, 6psm:D, 6psm:E, 6psm:F, 6pso:B, 6pso:A
9 7suk:SP 2234 65 0.0833 0.0090 0.3077 4.1 6zqb:UT
10 7aju:UT 2313 65 0.0833 0.0086 0.3077 4.1 7ajt:UT, 6zqc:UT, 6zqd:UT, 6zqe:UT
11 6lqs:RP 2180 65 0.0833 0.0092 0.3077 4.2 7d63:RP, 6lqp:RP, 6lqq:RP, 6lqr:RP, 6lqt:RP, 6lqu:RP, 6lqv:RP
12 4gdz:A 149 71 0.1125 0.1812 0.3803 4.4
13 8aaf:e 1527 44 0.0667 0.0105 0.3636 5.6 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
14 7tbv:A 682 63 0.0917 0.0323 0.3492 9.4 7tbv:B, 7tbv:C, 7tbv:D
15 4ovy:A 305 39 0.0500 0.0393 0.3077 9.5
16 3fes:B 141 40 0.0542 0.0922 0.3250 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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