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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TACTATQQTAAYKTLVSILSESSFSQCSKDSGYSMLTATALPTNAQYKLMCASTACNTMIKKIVALNPPDCDLTVPTSGL
VLDVYTYANGFSSKCASL

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2aib:A 98 98 1.0000 1.0000 1.0000 8.14e-67 2aib:B
2 1bxm:A 99 96 0.8469 0.8384 0.8646 6.56e-57 1lri:A
3 3tcm:A 479 54 0.1429 0.0292 0.2593 0.14 3tcm:B
4 6z1p:Bw 662 88 0.2449 0.0363 0.2727 0.89
5 6huy:B 357 61 0.1735 0.0476 0.2787 8.1 6huy:A, 6huy:C, 6huy:D, 6huz:A
6 8sj7:A 404 29 0.1122 0.0272 0.3793 8.3 3k5q:A, 3k5y:A, 3k5z:A, 3k61:A, 3k62:A, 3k64:A, 6noc:A, 6nof:A, 6noh:A, 6pun:A, 6pun:C, 3qg9:A, 3qgb:A, 3qgc:A, 7rzz:A, 7s02:A, 3v6y:A, 3v74:A
7 8q7x:A 1914 59 0.1633 0.0084 0.2712 9.4
8 8qp8:A 1918 59 0.1633 0.0083 0.2712 9.4
9 5z57:A 1978 59 0.1633 0.0081 0.2712 9.4
10 8i0p:A 2149 59 0.1633 0.0074 0.2712 9.4 8q7q:A, 8q7v:A, 8q7w:A
11 7abg:A 2174 59 0.1633 0.0074 0.2712 9.4 7abi:A, 8q91:A, 8rc0:A
12 8y6o:C 2227 59 0.1633 0.0072 0.2712 9.4 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
13 5z56:A 2232 59 0.1633 0.0072 0.2712 9.4 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
14 8h6k:5B 2253 59 0.1633 0.0071 0.2712 9.4 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
15 8c6j:A 2261 59 0.1633 0.0071 0.2712 9.4 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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