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BioLiP
>protein
SYQDYINCSREALLEKMAELLPEKRLTHCLGVERAAMELAQRFGVDVEKASLAGLLHDYAKKLSDQEFLVLIDRYQLDPD
LKNWGNNVWHGMVGIYKIQEDLDLHDSEILRAIEIHTVGAGQMTDLDKVIYVADYIEHNRAFPGVDVAREIASLSLNKAV
AYETARTVEYLAHQGFPIYPQTLETYNAFVHYLK

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jk9:A 195 194 1.0000 0.9949 1.0000 1.61e-145 8jja:A, 8jjk:A, 8jk5:A, 8jk8:A, 8jka:A, 8jkp:A, 8jkr:A, 8yt5:A
2 2ogi:B 194 193 0.6546 0.6546 0.6580 1.11e-94 2ogi:A
3 8wmy:A 198 194 0.6546 0.6414 0.6546 1.05e-88 8wmy:B
4 2o08:A 187 182 0.3557 0.3690 0.3791 1.24e-39 2o08:B
5 3ccg:A 189 173 0.3402 0.3492 0.3815 5.47e-31
6 4yfi:C 269 145 0.1804 0.1301 0.2414 0.14 6b5j:A, 6b5j:B, 6b5j:C, 6b5j:D, 7mgj:A, 7mgj:B, 7mgj:C, 7mgj:D, 7mgk:A, 7mgk:B, 7mgk:C, 7mgk:D, 4yff:A, 4yff:B, 4yff:C, 4yff:D, 4yfi:A, 4yfi:B, 4yfi:D
7 2pq7:A 174 40 0.0773 0.0862 0.3750 0.28
8 8dl7:A 467 87 0.1186 0.0493 0.2644 0.79 8dl8:A
9 8dl6:A 442 86 0.1186 0.0520 0.2674 1.0 8bzy:A, 8c03:A, 6vyh:A, 6wbv:A
10 2z7x:B 520 104 0.1392 0.0519 0.2596 2.4
11 2d7i:A 536 59 0.1031 0.0373 0.3390 2.7 2d7r:A
12 3ugg:A 524 15 0.0464 0.0172 0.6000 9.8 3ugg:B, 3ugh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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