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BioLiP
>protein
SVVGSLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKK

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5n5y:I 99 63 1.0000 0.6364 1.0000 4.18e-41 5n5z:I, 5n60:I
2 6hlq:I 111 63 1.0000 0.5676 1.0000 4.45e-41 5g5l:I, 6hls:I
3 4c2m:I 124 63 1.0000 0.5081 1.0000 4.58e-41 4c2m:X, 4c3h:I, 4c3i:I, 4c3j:I, 6h67:I, 6h68:I, 6hko:I, 6hlr:I, 5lmx:I, 5m3f:I, 5m3m:I, 5m5x:I, 5n61:I, 5oa1:I, 6rqt:I, 6ruo:I, 6rwe:I, 6tps:I, 5w5y:I, 5w64:I, 5w65:I, 5w66:I, 4ym7:AI, 4ym7:BI, 4ym7:CI, 4ym7:DI, 4ym7:EI, 4ym7:FI
4 7aoc:I 57 59 0.4444 0.4912 0.4746 6.63e-14 7aod:I, 7aod:U, 7aoe:I
5 5eya:G 86 25 0.1905 0.1395 0.4800 0.60 5eya:F, 5fer:A, 5fer:D
6 6rr0:B 118 28 0.1429 0.0763 0.3214 6.2 6qsz:A, 6qsz:K, 6qsz:C, 6qsz:E, 6qsz:G, 6qsz:I, 6qsz:M, 6qsz:O, 6qtm:C, 6qtm:B, 6qtm:A, 6rr0:A, 6rr0:E, 6rr0:D, 6rr0:C, 6rr0:F, 6rr0:G
7 4o1e:A 271 47 0.1587 0.0369 0.2128 6.9 4o1e:B, 4o1f:A, 4o1f:B
8 8ag6:B 975 29 0.1587 0.0103 0.3448 7.2 2o8b:B, 2o8c:B, 2o8d:B, 2o8e:B, 2o8f:B
9 8em7:A 4378 49 0.2381 0.0034 0.3061 7.5 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
10 2a3c:A 395 27 0.2063 0.0329 0.4815 9.0 2a3a:A, 2a3a:B, 2a3b:A, 2a3b:B, 2a3c:B, 2a3e:A, 2a3e:B, 3ch9:A, 3ch9:B, 3chc:A, 3chc:B, 3chd:A, 3chd:B, 3che:A, 3che:B, 3chf:A, 3chf:B, 2iuz:A, 2iuz:B, 1w9u:A, 1w9u:B, 1w9v:A, 1w9v:B
11 4nmy:A 299 36 0.2222 0.0468 0.3889 9.4 4nmy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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