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BioLiP
>protein
SVPTKLEVVAATPTSLLISWDAGHWWEWVTYYRITYGETGGNSPVQEFTVPGYSSTATISGLKPGVDYTITVYAPTSDSP
ISINYRT

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vxu:E 90 89 1.0000 0.9667 0.9775 4.21e-56 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
2 6ux8:B 86 88 0.8391 0.8488 0.8295 1.16e-41
3 4jmh:A 200 90 0.8276 0.3600 0.8000 1.35e-40 4jmg:A
4 3ch8:A 190 91 0.8391 0.3842 0.8022 2.44e-39 2qbw:A
5 4lxo:A 184 93 0.8161 0.3859 0.7634 4.04e-38 4lxo:B
6 4lxo:A 184 72 0.2184 0.1033 0.2639 0.29 4lxo:B
7 6d0j:C 90 91 0.8391 0.8111 0.8022 5.11e-38 6d0k:C, 6d0n:C
8 5v7p:D 95 94 0.8276 0.7579 0.7660 2.84e-37
9 8f0m:B 91 92 0.8046 0.7692 0.7609 2.91e-37
10 5a43:C 96 95 0.8161 0.7396 0.7474 3.12e-37
11 3csb:A 464 92 0.8391 0.1573 0.7935 1.75e-35
12 5mtm:B 92 93 0.7816 0.7391 0.7312 1.95e-31
13 7l0f:H 94 95 0.7586 0.7021 0.6947 3.27e-31 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
14 6x39:A 100 77 0.3218 0.2800 0.3636 6.40e-04
15 2mnu:A 93 69 0.2644 0.2473 0.3333 0.029
16 6gvk:A 201 81 0.2989 0.1294 0.3210 0.046 6gvl:A
17 6gvk:A 201 77 0.2184 0.0945 0.2468 2.2 6gvl:A
18 6iaa:A 815 69 0.2414 0.0258 0.3043 0.047 6iaa:B
19 4xdd:A 582 39 0.1609 0.0241 0.3590 3.5 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
20 1i7y:A 162 47 0.1379 0.0741 0.2553 4.6 1ktp:A, 6ypq:A, 6yyj:A, 6yyj:E, 6yyj:C
21 4xyj:A 768 25 0.1264 0.0143 0.4400 6.4 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
22 6rqx:A 862 72 0.2299 0.0232 0.2778 7.2 6m8p:A, 6m8p:B, 6m8p:C, 6m8p:D, 6m8p:E, 6m8p:F, 6m8p:G, 6m8p:H, 6m8p:I, 6m8p:J, 6m8p:K, 6m8p:L, 6m8p:M, 6m8p:N, 6m8p:O, 6m8p:P, 6m8p:Q, 6m8p:R, 6m8p:S, 6m8p:T, 6m8p:U, 6m8p:V, 3mdj:B, 6mgq:A, 6mgq:B, 6mgq:C, 6q4r:A, 3qnf:A, 3qnf:B, 3qnf:C, 6ryf:A, 6t6r:A, 2yd0:A, 7z28:A
23 2zoo:A 438 26 0.1149 0.0228 0.3846 7.6
24 3hbg:A 353 49 0.1724 0.0425 0.3061 7.8
25 3c9f:B 540 59 0.2184 0.0352 0.3220 8.1 3c9f:A
26 4ifd:J 948 23 0.1494 0.0137 0.5652 9.6 5c0x:J, 5jea:J, 2vnu:D
27 6oly:C 318 33 0.1264 0.0346 0.3333 9.7 2aef:A, 2aef:B, 5bkj:A, 5bkj:C, 5bkj:E, 5bkj:G, 5bkk:A, 5bkk:C, 5bkk:G, 8fz7:A, 8fz7:C, 8fz7:E, 8fz7:G, 3kxd:A, 3kxd:B, 4l73:A, 4l73:B, 4l74:A, 4l74:B, 4l75:A, 4l75:B, 4l75:C, 4l75:D, 4l75:E, 4l75:F, 4l76:A, 4l76:B, 4l76:C, 4l76:D, 4l76:E, 4l76:F, 1lnq:A, 1lnq:B, 1lnq:C, 1lnq:D, 1lnq:E, 1lnq:F, 1lnq:G, 1lnq:H, 6oly:A, 6oly:B, 6oly:D, 3rbx:A, 3rbx:B, 3rbx:C, 3rbx:D, 3rbx:E, 3rbx:F, 6u5n:A, 6u5n:E, 6u5n:B, 6u5n:F, 6u5n:C, 6u5n:G, 6u5n:D, 6u5n:H, 6u5p:A, 6u5p:E, 6u5p:B, 6u5p:F, 6u5p:C, 6u5p:G, 6u5p:D, 6u5p:H, 6u5r:A, 6u5r:B, 6u5r:C, 6u5r:D, 6u5r:E, 6u5r:F, 6u5r:G, 6u5r:H, 6uwn:A, 6uwn:E, 6uwn:B, 6uwn:F, 6uwn:C, 6uwn:G, 6uwn:D, 6uwn:H, 6ux4:A, 6ux4:E, 6ux4:B, 6ux4:F, 6ux4:C, 6ux4:G, 6ux4:D, 6ux4:H
28 5c0w:J 970 23 0.1494 0.0134 0.5652 9.9 5k36:K, 5vzj:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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