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BioLiP
>protein
SVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKI
REIIEEEEEINYMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFNGKKKVHYYNEISVSIACGLLLAALQNA
GLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVTVHH

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tnz:A 222 222 0.9909 0.9820 0.9820 7.08e-162 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
2 4ttc:A 220 220 0.9000 0.9000 0.9000 1.36e-141 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
3 3gb5:A 185 218 0.8409 1.0000 0.8486 3.27e-128 3to0:A, 3to0:B
4 4ttb:A 189 218 0.7727 0.8995 0.7798 2.55e-112 4ttb:B
5 5ko8:B 218 217 0.4455 0.4495 0.4516 1.27e-66 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
6 5ko7:B 200 218 0.4136 0.4550 0.4174 1.23e-55
7 6pz0:A 185 177 0.2955 0.3514 0.3672 2.69e-27 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
8 3eo8:A 219 114 0.1864 0.1872 0.3596 3.12e-13 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
9 4dn2:A 191 199 0.2727 0.3141 0.3015 4.17e-13 4dn2:B
10 4g8s:A 182 197 0.2909 0.3516 0.3249 8.95e-13 4g8s:B
11 1zch:A 249 207 0.2500 0.2209 0.2657 1.75e-08
12 3gbh:B 213 64 0.1091 0.1127 0.3750 4.70e-08 3gbh:A, 3gbh:C, 3gbh:D
13 8cqt:B 164 179 0.1955 0.2622 0.2402 1.20e-07 8cqt:A
14 4eo3:A 321 179 0.2136 0.1464 0.2626 5.73e-07 4eo3:B
15 1nox:A 200 53 0.1000 0.1100 0.4151 1.19e-06
16 4xoq:A 204 146 0.1818 0.1961 0.2740 4.52e-06 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
17 3gfa:A 197 144 0.1727 0.1929 0.2639 6.55e-06 3gfa:B
18 3ek3:A 187 207 0.2136 0.2513 0.2271 1.75e-05
19 5j62:B 209 56 0.0818 0.0861 0.3214 3.89e-05 5j62:A
20 2isj:A 219 202 0.2318 0.2329 0.2525 7.00e-05 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
21 3e10:B 167 173 0.1955 0.2575 0.2486 7.06e-05 3e10:A
22 3qdl:A 178 56 0.0909 0.1124 0.3571 9.16e-05 3qdl:B, 3qdl:C, 3qdl:D
23 3m5k:A 168 185 0.2136 0.2798 0.2541 1.08e-04 3m5k:B
24 3gag:A 206 62 0.0864 0.0922 0.3065 3.05e-04 3gag:B, 3gag:C, 3gag:D
25 2wzv:B 223 52 0.0909 0.0897 0.3846 3.10e-04 2wzv:A, 2wzw:A, 2wzw:B
26 3kwk:A 168 44 0.0864 0.1131 0.4318 3.29e-04
27 3gr3:A 226 210 0.2000 0.1947 0.2095 3.33e-04 3gr3:B
28 5j6c:A 173 49 0.0864 0.1098 0.3878 3.98e-04 5j6c:B
29 4qlx:A 217 65 0.0864 0.0876 0.2923 0.001 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
30 7s14:B 223 65 0.0682 0.0673 0.2308 0.002 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
31 6wt2:A 221 62 0.0682 0.0679 0.2419 0.002 6wt2:B, 6wt2:C, 6wt2:D
32 8uc3:A 180 59 0.0773 0.0944 0.2881 0.003 8uc3:B
33 7tmf:B 183 61 0.0864 0.1038 0.3115 0.003 7tmf:A, 7tmg:A, 7tmg:B
34 3e39:A 175 55 0.0773 0.0971 0.3091 0.005 3e39:B
35 3ge5:A 176 193 0.2045 0.2557 0.2332 0.006 3ge5:B
36 2b67:A 201 53 0.0773 0.0846 0.3208 0.007 2b67:B, 2b67:C, 2b67:D
37 8qyg:B 225 47 0.0727 0.0711 0.3404 0.007 8q5g:A, 8q5g:B, 8qyg:A
38 7dp0:A 223 46 0.0773 0.0762 0.3696 0.009 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
39 3ge6:A 210 61 0.0727 0.0762 0.2623 0.011 3ge6:B
40 3bem:B 210 61 0.0864 0.0905 0.3115 0.018 3bem:A
41 7jh4:A 223 47 0.0591 0.0583 0.2766 0.075 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
42 2hay:D 222 59 0.0773 0.0766 0.2881 0.15 2hay:A, 2hay:B, 2hay:C
43 3bm1:A 177 61 0.0727 0.0904 0.2623 0.18 3bm1:B
44 6czp:A 219 192 0.2000 0.2009 0.2292 0.24 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
45 5hei:A 246 152 0.1727 0.1545 0.2500 0.47 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
46 1v5y:A 217 67 0.0636 0.0645 0.2090 0.52 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
47 5hdj:B 248 58 0.0591 0.0524 0.2241 0.60 5hdj:A
48 3vif:A 473 110 0.1364 0.0634 0.2727 0.65 3ahz:A, 3ai0:A, 3vig:A, 3vij:A, 3vik:A, 3vil:A, 3vim:A, 3vin:A, 3vio:A, 3vip:A
49 2i7h:A 187 41 0.0591 0.0695 0.3171 0.77 2i7h:B, 2i7h:C, 2i7h:D
50 2fre:A 200 43 0.0682 0.0750 0.3488 0.84 2fre:B
51 7vmd:A 266 61 0.0773 0.0639 0.2787 1.1 7vme:A
52 8dil:A 175 61 0.0682 0.0857 0.2459 1.1 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
53 3e1t:A 437 56 0.0727 0.0366 0.2857 1.3
54 3pxv:B 189 75 0.0909 0.1058 0.2667 4.1 3pxv:A, 3pxv:C, 3pxv:D
55 5ztm:A 168 68 0.0864 0.1131 0.2794 4.6 5ztm:B
56 6wfq:C 228 32 0.0636 0.0614 0.4375 6.2 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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