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BioLiP
>protein
STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1rgo:A 70 70 1.0000 1.0000 1.0000 1.02e-47
2 6nzl:A 78 71 0.5143 0.4615 0.5070 4.35e-19
3 6nzl:A 78 29 0.1571 0.1410 0.3793 0.91
4 1m9o:A 40 34 0.3571 0.6250 0.7353 4.07e-13
5 1m9o:A 40 35 0.2429 0.4250 0.4857 8.58e-07
6 6pmg:X 35 32 0.2571 0.5143 0.5625 3.67e-06
7 6pmg:X 35 30 0.2000 0.4000 0.4667 0.003
8 5elk:A 121 56 0.2857 0.1653 0.3571 4.35e-04
9 5elk:A 121 73 0.2857 0.1653 0.2740 1.2
10 5elk:A 121 25 0.1429 0.0826 0.4000 2.5
11 7dco:M 176 29 0.1286 0.0511 0.3103 0.017 5gm6:a
12 7dco:M 176 32 0.1143 0.0455 0.2500 0.078 5gm6:a
13 7dvq:M 191 35 0.1714 0.0628 0.3429 0.017 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
14 7dvq:M 191 25 0.1286 0.0471 0.3600 0.089 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
15 6ff4:t 172 35 0.1714 0.0698 0.3429 0.018 8ch6:Z, 6ff7:t, 7qtt:Z
16 6ff4:t 172 25 0.1286 0.0523 0.3600 0.087 8ch6:Z, 6ff7:t, 7qtt:Z
17 7k95:A 53 56 0.2571 0.3396 0.3214 0.021 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
18 2fc6:A 50 29 0.1571 0.2200 0.3793 0.049
19 2wle:C 211 32 0.1857 0.0616 0.4062 0.057 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
20 2cqe:A 98 63 0.2857 0.2041 0.3175 0.11
21 5elh:A 142 34 0.2429 0.1197 0.5000 0.52 5elh:B
22 2d9m:A 69 19 0.1571 0.1594 0.5789 0.95
23 8y6o:V 101 20 0.1286 0.0891 0.4500 1.0
24 8y6o:V 101 20 0.1286 0.0891 0.4500 5.6
25 6nzo:S 233 22 0.1571 0.0472 0.5000 1.4 6px3:S
26 5aj4:Ba 393 22 0.1429 0.0254 0.4545 3.1 6gaw:Ba, 6gb2:Ba, 7nqh:Ba, 7nql:Ba, 7nsh:Ba, 7nsi:Ba, 7nsj:Ba, 8oin:Bm, 8oiq:Bm, 6ydp:Ba, 6ydw:Ba
27 4ii1:B 139 28 0.1714 0.0863 0.4286 3.7 4ii1:A, 4ii1:C, 4ii1:D
28 3dty:A 374 28 0.1714 0.0321 0.4286 3.7 3dty:E
29 7dco:R 261 18 0.1000 0.0268 0.3889 7.0 7b9v:M, 6bk8:G, 6exn:M, 5gm6:R, 5gmk:R, 6j6g:R, 6j6h:R, 6j6n:R, 6j6q:R, 5lj3:M, 5lj5:M, 5mps:M, 5mq0:M, 3tp2:A, 3tp2:B, 3u1l:A, 3u1m:A, 5wsg:R, 5y88:N, 5ylz:N
30 2jfq:A 265 9 0.1143 0.0302 0.8889 7.2 2jfq:B
31 4c3b:C 178 18 0.1429 0.0562 0.5556 8.1 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
32 2e5s:A 98 25 0.1857 0.1327 0.5200 8.5 3d2q:A, 3d2q:B, 3d2q:C, 3d2q:D, 3d2s:A, 3d2s:B, 3d2s:C, 3d2s:D
33 6pzq:A 157 18 0.1429 0.0637 0.5556 9.0 6pzq:C
34 1pn4:D 273 41 0.1714 0.0440 0.2927 9.2 1pn4:A, 1pn4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218