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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
STGMVMVHEVPFPPQIITSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDALAS
AEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFE
TEGKEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVLT

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dok:A 208 208 1.0000 1.0000 1.0000 4.15e-154
2 5wkr:A 215 208 0.4567 0.4419 0.4567 2.11e-47 5wks:A
3 8v8p:A 211 187 0.2644 0.2607 0.2941 2.83e-17 8v8p:B, 8v8p:C, 8v8p:D
4 6ms8:G 209 201 0.2837 0.2823 0.2935 5.53e-16 6ms8:A, 6ms8:D, 6ms8:E, 6ms8:F
5 1jx0:A 217 194 0.2740 0.2627 0.2938 3.47e-15 1eyq:A, 1eyq:B, 1fm7:A, 1fm7:B, 1fm8:A, 1jep:A, 1jep:B, 1jx1:C
6 5yx4:A 232 187 0.2548 0.2284 0.2834 6.10e-15
7 3c0o:A 450 40 0.0673 0.0311 0.3500 1.8 3c0o:B
8 2pfy:A 301 25 0.0577 0.0399 0.4800 4.0 2pfy:B, 2pfy:C, 2pfy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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