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BioLiP
>protein
STCRVCAKYASNKRSPKLFERSNTKMIDNIEALTGLRLENYGCLPDQICECCSMELASAVKLRERCIAAQRELLLGLTEE
QRQG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7po9:A 88 84 1.0000 0.9545 1.0000 2.01e-57 7po9:B
2 3guw:A 233 32 0.1429 0.0515 0.3750 0.16 3guw:B, 3guw:C, 3guw:D
3 6nr7:A 1086 36 0.1429 0.0110 0.3333 0.33 4dj9:A, 4e17:A, 6fq4:A, 2gdc:A, 2gww:A, 2hsq:A, 2ibf:A, 5l0c:B, 5l0c:C, 5l0c:D, 5l0d:B, 5l0d:D, 5l0g:B, 5l0g:C, 5l0h:A, 4pr9:D, 4pr9:E, 4pr9:F, 3rf3:A, 3rf3:B, 1rkc:A, 3s90:A, 3s90:B, 1syq:A, 1t01:A, 3tj5:A, 3tj6:A, 1u6h:A, 1xwj:A, 1ydi:A, 3zdl:A, 1zvz:A, 1zw2:A, 1zw3:A
4 4izt:A 263 39 0.1786 0.0570 0.3846 0.48 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
5 7w6l:C 158 54 0.1905 0.1013 0.2963 1.2 5f59:A, 5f6k:C, 5f6k:E, 6kiw:K, 7w6l:E
6 7vcf:A 1496 29 0.1429 0.0080 0.4138 1.5
7 7xzi:A 1598 29 0.1429 0.0075 0.4138 1.5
8 7xzj:A 423 29 0.1429 0.0284 0.4138 6.1
9 4v8z:CV 568 39 0.1667 0.0246 0.3590 7.9
10 1g7s:A 576 39 0.1667 0.0243 0.3590 7.9 1g7t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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