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BioLiP
>protein
STAKVTLVTSGGSSQDFTSEQTNITTDFARVRVTKGMWIFYQQANYNDASGGGSLWIKLDESSHLMDLPFTPRSFRPVKT
FQVGATLYKHVNFGGKELDLPNSNPRIDIGGVSSALISQGQWRLYEQYDYAGPSTRRGPGVYVNAGALGVANDALKSMER
E

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iau:A 161 161 1.0000 1.0000 1.0000 1.20e-119
2 2bv2:A 83 79 0.1677 0.3253 0.3418 1.95e-10 2bv2:B
3 2k1w:A 85 77 0.1553 0.2941 0.3247 3.59e-08 5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
4 2k1w:A 85 53 0.1180 0.2235 0.3585 0.055 5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
5 5ht7:A 82 60 0.1118 0.2195 0.3000 0.14 5ht7:B, 5ht7:C
6 7el9:A 1731 112 0.1925 0.0179 0.2768 0.35 7el9:D, 7elc:A
7 7elb:A 1937 112 0.1925 0.0160 0.2768 0.35 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
8 7col:A 280 56 0.0994 0.0571 0.2857 3.8 7col:B
9 5ufv:A 228 68 0.0994 0.0702 0.2353 4.8 5ufv:B, 5ufv:C, 5ufv:D, 5ufv:E, 5ufv:F
10 5gws:B 214 64 0.1118 0.0841 0.2812 5.6 5gws:C, 5gws:D
11 3ik2:A 512 88 0.1304 0.0410 0.2386 5.8
12 8snb:8S 304 84 0.1677 0.0888 0.3214 7.4
13 7urg:A 401 69 0.1429 0.0574 0.3333 8.7 7urg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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