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BioLiP
>protein
SSRDVIKTLIRTHIKDRELRSELIGYLNKAENDEEIQEIANTVNDIIDG

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pno:A 49 49 1.0000 1.0000 1.0000 4.13e-29 7pno:C, 7pno:G, 7pno:E, 7pno:I, 7pno:K, 7pno:M
2 6bd0:A 300 43 0.3265 0.0533 0.3721 1.4 6bda:A, 6bdb:A, 3qqy:A, 6uvw:A, 6uvw:D, 6uwg:A, 6uwh:A, 6uwj:A
3 8cmk:A 913 41 0.2857 0.0153 0.3415 2.3 8cmk:B, 6gx9:A, 6gx9:B
4 4ldz:A 196 45 0.2449 0.0612 0.2667 4.8 5iuk:C, 5iul:C, 5iul:F, 4ldz:B, 4le0:A, 4le0:B, 7ssj:B, 7ssj:E, 7ssj:F
5 4qi6:A 800 14 0.2041 0.0125 0.7143 4.8 4qi3:A, 4qi3:B, 4qi4:A, 4qi5:A
6 3l1p:A 147 27 0.2041 0.0680 0.3704 9.8 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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