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BioLiP
>protein
SRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELG
RWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWD

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4e0i:A 152 113 0.9912 0.7368 0.9912 6.99e-83 4e0h:A, 4e0i:B, 4e0i:C, 3w4y:A, 3w4y:B, 3w4y:C
2 3tk0:A 126 109 0.4513 0.4048 0.4679 5.34e-36 4ldk:A, 3mbg:A, 3mbg:B, 3mbg:C, 3o55:A, 3u2l:A, 3u2m:A, 3u5s:A
3 1oqc:A 112 104 0.4425 0.4464 0.4808 8.67e-36 1oqc:B, 1oqc:C, 1oqc:D, 3r7c:A, 3r7c:B, 3r7c:C, 3r7c:D
4 2hj3:A 101 100 0.3982 0.4455 0.4500 4.33e-30 2hj3:B
5 1jra:A 106 88 0.2743 0.2925 0.3523 2.94e-20 1jr8:A, 1jr8:B, 1jra:B, 1jra:C, 1jra:D
6 3td7:A 253 84 0.2212 0.0988 0.2976 6.54e-10 3gwn:A, 3gwn:B
7 3gwl:A 106 81 0.2035 0.2170 0.2840 2.99e-05 3gwl:B
8 3lli:A 251 98 0.2301 0.1036 0.2653 0.004 3llk:A, 3llk:B, 3llk:C
9 3t58:B 504 86 0.2035 0.0456 0.2674 0.005 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
10 3g4f:A 515 35 0.1150 0.0252 0.3714 1.9 3g4f:B
11 8unf:A 187 77 0.1681 0.1016 0.2468 3.5 3u5z:A, 3u5z:K, 3u60:A, 8uh7:A, 8uk9:A, 8uk9:Q
12 4liq:E 469 96 0.2124 0.0512 0.2500 5.2
13 7qf2:AAA 117 33 0.1062 0.1026 0.3636 6.0 8a2v:A, 8a2w:A, 8a2w:B, 8a4e:A, 4eep:A, 4eer:A, 4ees:A, 4eet:B, 6gpu:A, 6gpv:A, 8q5f:A, 8q5f:B, 7qf3:AAA, 7qf4:AAA, 7qf5:AAA, 6qqh:A, 6qqi:A, 6qqj:A, 6qqk:A, 6qsa:A, 6s45:A, 6s46:A
14 3k8k:A 650 42 0.1239 0.0215 0.3333 6.4 6bs6:A, 6bs6:B, 3k8k:B, 3k8l:A, 3k8l:B, 3k8m:A, 3k8m:B
15 6bni:A 502 39 0.1239 0.0279 0.3590 7.7 6bni:B, 6c86:A, 6c86:B, 5eln:A, 5eln:B, 5eln:C, 5eln:D, 5elo:A, 5elo:B, 5elo:C, 5elo:D, 6hcw:A, 6hcw:B, 7zog:A, 7zog:B, 7zog:C, 7zog:D
16 7bb9:A 399 66 0.1504 0.0426 0.2576 9.1 7bb8:A, 7bb8:B
17 6ej7:A 706 67 0.1681 0.0269 0.2836 9.4 6ej8:A, 6ej9:A, 6eja:A, 6ejb:A, 6ejc:A, 6ejd:A, 6eje:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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