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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRRMKTQEIKNVTLEDVDFLKNLGVWVEIYHHLEKGLLQQCFNLVKKNMEALYRQSSFGWDDSEKLKEMEMEKLEYICIF
EKTSKKLVGFLSFEDTVEAGLTCLYIYEIQLDEHIRGRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNALNFYHHFDF
VPHESSPQEKKFRSGKVIHPDYYILYTKSRKDW

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ua3:B 193 193 1.0000 1.0000 1.0000 5.32e-145 4ua3:A
2 7kd7:A 204 147 0.2591 0.2451 0.3401 2.57e-21 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
3 1tiq:A 173 64 0.1244 0.1387 0.3750 0.001 1tiq:B
4 7ciw:A 216 87 0.1140 0.1019 0.2529 0.054 7civ:A, 7cix:A
5 6z00:A 156 63 0.0984 0.1218 0.3016 0.067 6yzz:A, 6z00:B
6 3pp9:A 176 57 0.1036 0.1136 0.3509 0.38 3pp9:B, 3pp9:C
7 7w1y:B 651 93 0.1347 0.0399 0.2796 0.59 7w1y:3
8 6xtx:3 608 93 0.1347 0.0428 0.2796 0.61
9 5f47:B 152 108 0.1192 0.1513 0.2130 0.61 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
10 5hgz:A 211 66 0.1036 0.0948 0.3030 0.70 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
11 8tb9:D 443 60 0.0777 0.0339 0.2500 1.6 6c23:A, 6c23:Q, 6c24:A, 6c24:Q, 5wai:B, 5wai:F
12 8b9d:3 569 73 0.1036 0.0351 0.2740 2.3
13 2vi7:C 165 63 0.1036 0.1212 0.3175 3.0
14 1wwz:A 157 82 0.1192 0.1465 0.2805 3.1 1wwz:B
15 2b4b:B 170 70 0.1036 0.1176 0.2857 3.7 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
16 3di1:B 291 43 0.0622 0.0412 0.2791 6.6 3di1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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