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BioLiP
>protein
SRQIVDAQAVCTRCKESADFWCFECEQLLCAKCFEAHQWFLKHEARPLA

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mvw:A 51 49 1.0000 0.9608 1.0000 9.24e-31 6imq:A, 6imq:B, 6imq:C, 6imq:D, 2mvw:B
2 6o5k:A 46 30 0.2857 0.3043 0.4667 0.011 6o5k:B
3 3t9k:A 281 42 0.2857 0.0498 0.3333 4.8 4f1p:A, 4f1p:B, 3jue:A, 3jue:B, 3t9k:B
4 6ici:A 585 20 0.1837 0.0154 0.4500 6.5
5 5jcy:A 371 29 0.2041 0.0270 0.3448 9.1 5jcz:C, 4kp3:A, 4kp3:B, 6ku0:A, 6ku0:C, 4lx2:A
6 7wj9:A 733 29 0.2041 0.0136 0.3448 9.9 7wj9:B, 7wj9:C, 7wj9:D, 7wj9:F, 7wj9:E, 7wjb:A, 7wjc:A, 7wjd:A, 7wje:A, 7wjf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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