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BioLiP
>protein
SQLQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTY
KLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLK
NVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKED
ESHALKVCEDGPVFLGKQLSL

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ep1:B 261 261 1.0000 1.0000 1.0000 0.0 1ep2:B, 1ep3:B
2 5ksw:B 262 260 0.8889 0.8855 0.8923 1.46e-176 5ksw:D, 5ue9:B, 5ue9:D
3 4ylf:A 276 255 0.2759 0.2609 0.2824 8.14e-24 4ylf:C, 4yry:A, 4yry:C
4 5jca:S 279 249 0.2759 0.2581 0.2892 1.89e-10 5jfc:S
5 5vj7:B 282 270 0.2644 0.2447 0.2556 5.81e-07
6 7qty:A 279 145 0.1494 0.1398 0.2690 7.39e-05 7qu0:A
7 8u87:A 621 90 0.0958 0.0403 0.2778 1.41e-04 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
8 8x2l:B 525 102 0.0958 0.0476 0.2451 2.65e-04 7u8g:A
9 2pia:A 321 209 0.1954 0.1589 0.2440 3.21e-04
10 2r6h:C 289 151 0.1686 0.1522 0.2914 0.003 2r6h:A, 2r6h:B, 2r6h:D
11 5ogx:A 333 199 0.1839 0.1441 0.2412 0.003
12 8wej:B 569 110 0.0958 0.0439 0.2273 0.022 8gz3:B, 8kei:B
13 7ylr:A 326 110 0.1111 0.0890 0.2636 0.023
14 8qq7:A 399 138 0.1264 0.0827 0.2391 0.069 8qq1:C, 8qq1:F, 8qq1:G, 8qq5:A, 8qq5:B, 8qq5:C, 8qt6:A, 8qt7:A, 8qt9:A, 8qta:A
15 6laa:A 753 132 0.1188 0.0412 0.2348 0.10 6gii:A, 6ldl:A
16 5yly:B 269 147 0.1456 0.1413 0.2585 0.13 5yly:A
17 6yw5:CC 438 74 0.0805 0.0479 0.2838 0.14 6ywe:CC, 6ywx:CC, 6ywy:CC
18 4wqm:A 326 215 0.1954 0.1564 0.2372 0.18
19 5o0x:A 261 111 0.1073 0.1073 0.2523 0.26 8cak:A, 8cal:A, 8cao:A, 8cap:A, 8cap:E, 8cap:B, 8cap:C, 8cb0:A
20 6c4i:v 362 65 0.0805 0.0580 0.3231 0.38 6c4h:v, 5czp:XY, 5czp:QY, 5dfe:QY, 5dfe:XY, 5h5u:4, 5mdv:7, 5mdw:7, 5mgp:z, 1ml5:Z, 7o1c:B9, 6og7:8, 6ogf:8, 6ogg:8, 7oj0:8, 6ost:7, 6ot3:A, 6ouo:A, 8p16:6, 8p17:6, 8p18:6, 8qk7:6, 5u4i:v, 5u9f:Z, 5u9g:Z
21 2eix:A 243 170 0.1456 0.1564 0.2235 0.44 2eix:B
22 5u4j:v 132 60 0.0728 0.1439 0.3167 0.45
23 7stm:A 801 67 0.0766 0.0250 0.2985 0.61 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
24 7rom:A 255 143 0.1226 0.1255 0.2238 0.75
25 6kbh:A 765 205 0.1456 0.0497 0.1854 0.85
26 1ozv:B 441 104 0.0920 0.0544 0.2308 1.1 2h21:A, 2h21:B, 2h21:C, 2h23:A, 2h23:B, 2h23:C, 2h2e:A, 2h2e:B, 2h2e:C, 2h2j:A, 2h2j:B, 2h2j:C, 1mlv:A, 1mlv:B, 1mlv:C, 1ozv:A, 1ozv:C, 1p0y:A, 1p0y:B, 1p0y:C
27 7lrn:B 250 51 0.0536 0.0560 0.2745 2.1 7lrn:A
28 4pqi:A 238 47 0.0575 0.0630 0.3191 3.1
29 1l0o:A 141 55 0.0690 0.1277 0.3273 3.7 1l0o:B, 1th8:A, 1thn:A, 1thn:C, 1tid:A, 1tid:C, 1til:A, 1til:C, 1til:E
30 1cne:A 260 92 0.0805 0.0808 0.2283 3.9 1cnf:A, 2cnd:A
31 7d3e:C 1380 169 0.1341 0.0254 0.2071 4.4 7d3e:A, 7d3f:C, 7d3f:A
32 6cay:A 165 47 0.0536 0.0848 0.2979 4.9 6cay:B
33 3js8:A 538 67 0.0651 0.0316 0.2537 5.4
34 8fgw:A 1081 71 0.0843 0.0204 0.3099 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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