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BioLiP
>protein
SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVE
VKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSESHFPYVLFLEGSNFLT
ENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMF
DISTTSLRVLGRDLFEQLTSK

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ckq:A 261 261 1.0000 1.0000 1.0000 0.0 1cl8:A, 1eri:A, 2oxv:A, 1qps:A, 1qrh:A, 1qri:A
2 6esq:I 347 143 0.1686 0.1268 0.3077 0.051
3 1n5d:A 288 30 0.0421 0.0382 0.3667 4.4
4 7b1s:B 466 125 0.1303 0.0730 0.2720 5.9 7b1s:E, 7b2c:B, 7b2c:E
5 5mej:A 499 49 0.0575 0.0301 0.3061 6.2 5e9n:A, 5mew:A, 5mhu:A, 5mhv:A, 5mhw:A, 5mhx:A, 5mhy:A, 5mhz:A, 5mi1:A, 5mi2:A, 5mia:A, 5mib:A, 5mic:A, 5mid:A, 5mie:A, 5mig:A, 6rgh:A, 6rgp:A, 6rhh:A, 6rhi:A, 6rho:A, 6rhp:A, 6rhr:A, 6rhu:A, 6rhx:A, 6ri0:A, 6ri2:A, 6ri4:A, 6ri6:A, 6ri8:A, 6rii:A, 6rik:A, 6ril:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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