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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SPLKHFVLAKKAITAIFDQLLEFVTEGSHFVEATYKNPELDRIATEDDLVEMQGYKDKLSIIGEVLSRRHMKVAFFGRTS
SGKSSVINAMLWDKVLPSGIGHITNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVRVFWPKA
KCALLRDDLVLVDSPGTDVTTELDSWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASE
PEYMEDVRRQHMERCLHFLVEELKVVNALEAQNRIFFVSAKEVLSARKQKAVALAEGFHARLQEFQNFEQIFEECISQSA
VKTKFEQHTIRAKQILATVKNIMDSVNLAAEEIDQLEKIQNNSKLLRNKAVQLENELENFTKQFLPS

The query sequence (length=387) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gom:A 407 404 0.9974 0.9484 0.9554 0.0 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
2 5goe:A 384 397 0.9587 0.9661 0.9345 0.0 5gns:A, 5gnt:A
3 6jfk:A 428 425 0.7261 0.6565 0.6612 0.0 6jfm:A, 6jfm:B
4 5oxf:C 601 121 0.0827 0.0532 0.2645 0.001 5oxf:D
5 9em9:A 512 56 0.0517 0.0391 0.3571 0.059 9em9:B
6 8eew:A 766 201 0.1344 0.0679 0.2587 0.092 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
7 6s47:Bi 952 179 0.0956 0.0389 0.2067 0.12
8 4p4s:B 336 36 0.0465 0.0536 0.5000 0.14 4p4s:A, 4p4t:A
9 5oxf:A 703 202 0.1111 0.0612 0.2129 0.16
10 5oxf:B 591 202 0.1111 0.0728 0.2129 0.17
11 6yxx:EA 532 72 0.0491 0.0357 0.2639 0.27 7aoi:XL, 6yxy:EA
12 6yxx:EA 532 41 0.0439 0.0320 0.4146 0.58 7aoi:XL, 6yxy:EA
13 3geh:A 442 56 0.0568 0.0498 0.3929 0.52
14 5wp9:A 590 33 0.0336 0.0220 0.3939 0.52 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
15 4h1v:A 358 33 0.0336 0.0363 0.3939 0.54
16 7am2:BU 463 23 0.0284 0.0238 0.4783 0.65
17 7am2:BU 463 26 0.0310 0.0259 0.4615 3.5
18 7szs:A 204 42 0.0413 0.0784 0.3810 0.65 7szs:B
19 5dn8:A 405 42 0.0388 0.0370 0.3571 0.70
20 7ax3:D2 582 64 0.0491 0.0326 0.2969 0.78 7ax3:B2, 7ax3:B, 7ax3:D, 7ax3:F, 7ax3:H, 7ax3:J, 7ax3:M, 7ax3:O, 7ax3:Q, 7ax3:S, 7ax3:U, 7ax3:W, 7ax3:Y, 7ax3:E2, 7ax3:G2, 7ax3:H2, 7ax3:I2, 7ax3:J2
21 4a0g:D 709 107 0.0801 0.0437 0.2897 0.81
22 8dmf:A 718 162 0.0853 0.0460 0.2037 1.0 7uvp:A
23 6dlu:P 747 64 0.0491 0.0254 0.2969 1.1 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
24 3t34:B 341 50 0.0465 0.0528 0.3600 1.1 3t34:A, 3t35:A, 3t35:B, 3t35:C, 3t35:D
25 8ro0:C 898 56 0.0465 0.0200 0.3214 1.5 8ro1:C
26 8i4a:A 1218 40 0.0439 0.0140 0.4250 2.1 8bwo:A, 8i4c:A, 8j3w:A, 8j3z:A, 8xol:A, 8xom:A
27 8bjf:A 1195 40 0.0439 0.0142 0.4250 2.2 8bwp:A, 8bwq:A, 8bwr:A, 8sx7:A, 8sx8:A, 8sxb:A
28 3zjc:E 286 33 0.0284 0.0385 0.3333 2.2 3zjc:A, 3zjc:B, 3zjc:C, 3zjc:D
29 8iza:A 1246 40 0.0439 0.0136 0.4250 2.3 8iz7:A, 8iz9:A, 8xok:A
30 2y65:C 343 46 0.0388 0.0437 0.3261 2.4 2y5w:A, 2y5w:B, 2y65:D, 2y65:B, 2y65:A
31 8t3k:C 541 82 0.0568 0.0407 0.2683 2.8
32 5w81:A 1173 20 0.0310 0.0102 0.6000 2.8
33 1h9t:A 232 36 0.0336 0.0560 0.3611 3.6 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
34 5wp4:A 485 43 0.0413 0.0330 0.3721 3.8
35 8swn:A 1135 40 0.0439 0.0150 0.4250 3.9
36 5ucv:A 187 20 0.0258 0.0535 0.5000 4.0
37 4ab7:H 422 47 0.0439 0.0403 0.3617 4.3 4ab7:D, 3zzf:A, 3zzf:B, 3zzf:C, 3zzf:D, 3zzh:A, 3zzh:B, 3zzh:C, 3zzh:D
38 6kzo:A 967 58 0.0439 0.0176 0.2931 4.3
39 8sxz:c 699 64 0.0465 0.0258 0.2812 4.6 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
40 7btb:m 469 28 0.0310 0.0256 0.4286 5.0 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
41 7c3k:B 389 47 0.0439 0.0437 0.3617 5.0 7c3k:A, 8jqz:A, 8jqz:B
42 7ej6:B 316 85 0.0568 0.0696 0.2588 5.5 7ej6:C, 7ej6:A, 7ej7:B, 7ej7:A, 7ej7:C
43 6djq:B 330 33 0.0336 0.0394 0.3939 5.7
44 6def:C 368 33 0.0336 0.0353 0.3939 6.0 6def:A, 6def:B, 6def:D, 6di7:A, 6djq:A, 6djq:C, 6djq:D, 6vjf:A, 6vjf:B, 6vjf:C, 6vjf:D
45 3pqc:B 194 23 0.0310 0.0619 0.5217 6.1 3pqc:A
46 2jas:C 195 17 0.0233 0.0462 0.5294 7.5 2jaq:A, 2jaq:B, 2jas:A, 2jas:B, 2jas:D, 2jas:E, 2jas:F, 2jat:A, 2jat:B
47 7of1:m 229 53 0.0413 0.0699 0.3019 7.6
48 2gj8:D 172 20 0.0284 0.0640 0.5500 7.8 2gj8:A, 2gj8:B, 2gj8:C, 2gj9:A, 2gj9:B, 2gj9:C, 2gj9:D, 2gja:A, 2gja:B
49 8rq4:A 1402 163 0.1163 0.0321 0.2761 8.0
50 1mkj:A 336 43 0.0388 0.0446 0.3488 8.0 4atx:C, 1bg2:A, 4hna:K, 8ixa:Y, 8ixa:S, 8ixa:T, 8ixa:U, 8ixa:V, 8ixa:W, 8ixa:X, 8ixa:Z, 8ixa:a, 8ixb:l, 8ixb:g, 8ixb:k, 8ixb:m, 8ixd:Y, 8ixd:S, 8ixd:T, 8ixd:U, 8ixd:V, 8ixd:W, 8ixd:X, 8ixd:Z, 8ixd:a, 8ixe:l, 8ixe:h, 8ixe:p, 8ixe:q, 8ixf:Y, 8ixf:S, 8ixf:T, 8ixf:U, 8ixf:V, 8ixf:W, 8ixf:X, 8ixf:Z, 8ixf:a, 8ixg:l, 8ixg:h, 8ixg:p, 8ixg:q, 3j8y:K, 2p4n:K
51 8fhk:C 574 37 0.0362 0.0244 0.3784 8.5 8fmv:C, 8fpf:C, 7m33:C, 8szc:C, 8t1p:C
52 7jps:E 386 54 0.0388 0.0389 0.2778 9.1 7cte:E, 7ctf:E, 7ctg:E
53 5ujm:E 357 56 0.0388 0.0420 0.2679 9.1
54 7jpp:E 406 54 0.0388 0.0369 0.2778 9.5 7jpo:E, 7jpq:E, 7jpr:E, 5uj7:E, 5uj7:F
55 3q0k:D 289 71 0.0491 0.0657 0.2676 9.6 3aco:A, 3haj:A, 3haj:B, 3lll:A, 3lll:B, 3q0k:A, 3q0k:B, 3q0k:C
56 3zjc:F 252 31 0.0258 0.0397 0.3226 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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