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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNSLQYVNVQVKDIEADLQHGVDESYTLDVEEDSDTITINAETVWGALHAFTTLQQLVISDGHGGLIIEEPVNIKDSPLY
PYRGIMLDTGRNFVSLPKIFEQLEGMSLSKLNVLHWHIDDAQSWPIWVDVYPEMVKDAYSPHEIYSRNDVRNIVNYARAR
GIRVIPEIDMPSHSSSGWKQVDPEMVTCTDSWWSNDDWPLHTAVEPNPGQLDIIYNKTYEVVGNVYKELSDIFPDHWFHV
GGDEIQPNCFNFSTHVTKWFAEDPSRTYHDLAQYWVDHAVPIFQNYSQERRLVMWEDIALSADNAHDVPKNIVMQSWNNG
LEYISNLTARGYDVIVSSSDFLYLDCGHGGFVTNDPRYNVMANPDANTPNFNYGGNGGSWCAPYKTWQRIYDYDFTLNLT
ETQAKHIIGATAPLWGEQVDDINVSSMFWPRAAALAELVWSGNRDANGNKRTTEMTQRILNFREYLVANGVQAQALVPKY
CLQHPHACDLYRNQAAI

The query sequence (length=497) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oar:D 498 497 1.0000 0.9980 1.0000 0.0 5oar:B
2 3s6t:A 575 481 0.3119 0.2696 0.3222 9.65e-80 3nsn:A, 3ozo:A, 3ozp:A, 3vtr:A, 3wmb:A, 3wmc:A, 5y0v:A, 5y1b:A
3 1o7a:A 483 466 0.2938 0.3023 0.3133 3.84e-65 2gk1:N, 2gk1:O, 2gk1:P, 2gk1:R, 2gk1:T, 3lmy:A, 3lmy:B, 1now:A, 1now:B, 1np0:D, 1np0:E, 1np0:F, 1o7a:B, 1o7a:C, 1o7a:D, 1o7a:E, 1o7a:F
4 2gk1:I 440 479 0.2918 0.3295 0.3027 6.97e-62 2gk1:J, 2gk1:K, 2gk1:L
5 6k35:A 640 440 0.2193 0.1703 0.2477 6.92e-35 6k35:B
6 6je8:A 469 414 0.2294 0.2431 0.2754 1.33e-32 6jea:A, 6jeb:A
7 6q63:A 751 445 0.2314 0.1531 0.2584 5.77e-32 6q63:B, 6q63:C
8 8pxv:B 634 480 0.2254 0.1767 0.2333 7.15e-32 8pxv:C
9 5fcz:A 499 442 0.2435 0.2425 0.2738 1.04e-30 4c7f:A, 4c7f:B, 4c7g:A, 1hp5:A, 1jak:A, 1m01:A, 1m03:A, 1m04:A
10 3sur:A 504 452 0.2254 0.2222 0.2478 2.75e-25 3sus:A, 3sut:A, 3suu:A, 3suv:A, 3suw:A
11 7dva:A 523 451 0.2193 0.2084 0.2417 1.27e-24 7dva:B, 7dvb:A, 7dvb:B, 7dvb:C, 7dvb:D
12 4pys:A 492 440 0.2233 0.2256 0.2523 2.91e-24 4pys:B
13 1c7s:A 858 194 0.1187 0.0688 0.3041 2.03e-19 1c7t:A
14 1c7s:A 858 173 0.0744 0.0431 0.2139 0.57 1c7t:A
15 7wdt:A 819 497 0.2113 0.1282 0.2113 5.69e-16 7wdu:A, 6z14:JJJ
16 1yht:A 344 354 0.1831 0.2645 0.2571 2.36e-12
17 7ezt:B 727 357 0.1650 0.1128 0.2297 3.97e-09
18 5bxp:A 636 332 0.1449 0.1132 0.2169 1.29e-05 5bxp:B, 5bxr:A, 5bxr:B, 5bxs:A, 5bxs:B, 5bxt:A, 5bxt:B, 4h04:A, 4h04:B, 4jaw:A, 4jaw:B
19 8hvc:A 602 341 0.1730 0.1429 0.2522 6.88e-05 8hvb:A, 8hvd:A
20 3hhs:B 656 79 0.0443 0.0335 0.2785 0.49
21 8b5v:A 244 99 0.0523 0.1066 0.2626 0.81 8b5v:B
22 3mle:B 224 78 0.0483 0.1071 0.3077 1.2 3mle:A, 3mle:C, 3mle:D, 3mle:E, 3mle:F, 3qxc:A, 3qxh:A, 3qxj:A, 3qxs:A, 3qxx:A, 3qy0:A
23 7ux7:A 378 76 0.0483 0.0635 0.3158 1.6 7ux6:A, 7ux6:B, 7ux7:B, 7ux8:A, 7ux8:B
24 6a0k:A 450 210 0.0885 0.0978 0.2095 2.5 6a0j:A, 6a0k:B, 6a0l:A, 5zxg:A
25 2p20:A 641 129 0.0644 0.0499 0.2481 3.2 5jrh:A, 5jrh:B, 2p20:B, 2p2b:A, 2p2b:B, 2p2f:A, 2p2f:B, 2p2j:A, 2p2j:B, 2p2m:A, 2p2m:B, 2p2q:A, 2p2q:B, 1pg3:A, 1pg3:B, 1pg4:A, 1pg4:B
26 2yll:A 436 28 0.0181 0.0206 0.3214 5.0 4az5:A, 4az6:A, 4az7:A, 4azb:A, 2yl6:A, 2yl8:A
27 8gme:C 439 108 0.0523 0.0592 0.2407 8.2 8s9i:A, 3upu:A, 3upu:B, 3upu:C
28 4kxf:K 904 87 0.0402 0.0221 0.2299 8.6 4kxf:B, 4kxf:D, 4kxf:F, 4kxf:H, 4kxf:L, 4kxf:N
29 2gtl:D 140 80 0.0443 0.1571 0.2750 8.8 2gtl:H, 2gtl:L, 5m3l:D, 5m3l:H, 5m3l:L, 1x9f:D, 1x9f:H, 1x9f:L
30 7pul:A 347 224 0.1006 0.1441 0.2232 9.2
31 4kxf:P 866 87 0.0402 0.0231 0.2299 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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