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BioLiP
>protein
SNRFFQKFYLRCGNCSAIQRSAQGYQPIANPILFKSDEHCRNYHDEQRRAAGYSGMVVTCRCHRCERVHSNWKVLDAQQF
LDAKLRMTPEERAQRLW

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:BD 97 97 1.0000 1.0000 1.0000 2.60e-71 7ane:BD
2 6hiv:Be 101 97 0.6495 0.6238 0.6495 6.31e-47 6hix:Be
3 3bxv:A 308 25 0.1134 0.0357 0.4400 2.7
4 7r04:A 2326 20 0.1031 0.0043 0.5000 2.9
5 7pgr:N 2423 20 0.1031 0.0041 0.5000 3.1 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
6 1z1n:X 516 38 0.1546 0.0291 0.3947 3.6
7 5cio:A 770 42 0.1443 0.0182 0.3333 4.1 5cio:B
8 4gy5:A 215 48 0.1443 0.0651 0.2917 5.5 3ask:A, 3ask:B, 3ask:D, 3asl:A, 3db3:A, 7fb7:B, 4gy5:B, 6iiw:A, 2lgg:A, 2lgk:A, 2lgl:A, 4qqd:A, 4qqd:B, 3shb:A, 3sou:A, 3sou:B, 3sow:A, 3sow:B, 3sox:A, 3sox:B, 3t6r:B, 3t6r:A, 8wms:A, 5xpi:A, 5yy9:A, 5yy9:B, 3zvy:A, 3zvy:B, 3zvz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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