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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNPSLVIVSPALPGANNGNWRTAQRWKALLSPVCSARVVQQWPDADASADTVMLALHARRSAESIAHWAHAHPGRGLGVV
LTGTDLYQDIGSDPQAQRSLQLAQRLVVLQALGAEALPPECRAKARVVYQSTSARAELPKSARQLRAVMVGHLRQVKSPQ
TLFDAARLLCGREDIRIDHIGDAGAGLGELARALASDCPGYRWLGALPHAQTRQRIQRAHVLVHTSALEGGAHVIMEAVR
SGTPVLASRVPGNVGMLGNDYAGYFPHGDAAALAALLEACRAGQGSAGLLDSLRTQCALRAPLFDPRAEQAALFQLLNEL
Q

The query sequence (length=321) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jjn:C 326 325 0.9969 0.9816 0.9846 0.0 8jjn:A, 8jjn:B, 8jjq:C, 8jjq:A, 8jjq:B, 8jjt:C, 8jjt:A, 8jjt:B, 8rz3:A, 8rz3:B, 8rz3:C
2 3c4q:A 393 139 0.1402 0.1145 0.3237 3.57e-04 3c4q:B, 3c4v:A, 3c4v:B
3 8qoy:A 1036 47 0.0498 0.0154 0.3404 0.006
4 5d00:A 361 265 0.1931 0.1717 0.2340 0.013 5d00:B, 5d01:A, 5d01:B
5 5n80:A 358 129 0.1153 0.1034 0.2868 0.15 6y6i:A
6 8s5h:A 507 121 0.1090 0.0690 0.2893 0.23 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
7 4pqg:A 506 80 0.0685 0.0435 0.2750 0.33 4pqg:B
8 4q2t:A 590 66 0.0685 0.0373 0.3333 0.35 4q2t:B, 4q2x:A, 4q2x:B
9 5fx8:A 563 44 0.0561 0.0320 0.4091 0.82 5fx8:B
10 8dqd:A 370 96 0.0779 0.0676 0.2604 0.87 8dvw:A, 8dvz:A
11 8b5q:B 365 52 0.0592 0.0521 0.3654 1.2 8b5q:A, 8b5s:A, 8b5s:B, 8b62:A, 8b62:B, 8b63:A, 8b63:B
12 3qry:B 426 66 0.0592 0.0446 0.2879 1.4 3qry:A, 3qsp:A, 3qsp:B
13 6kih:A 400 169 0.1402 0.1125 0.2663 1.9 6kih:C, 6kih:D, 6kih:E, 6kih:F, 6kih:H, 6kih:I, 6kih:K, 6kih:L, 6kih:B, 6kih:G, 6kih:J
14 5cnx:A 360 82 0.0748 0.0667 0.2927 3.7 5cnx:B, 5cnx:C
15 3oth:A 395 80 0.0623 0.0506 0.2500 3.9 3otg:A, 3oth:B
16 3mbo:E 375 270 0.1807 0.1547 0.2148 4.2 3mbo:A, 3mbo:C, 3mbo:H
17 7dnz:A 591 38 0.0436 0.0237 0.3684 5.6 7dny:A, 7dny:B, 7dnz:B, 7ekl:A, 7ekl:B, 8k7b:A, 8k7b:B, 8k7c:A, 8k7c:B, 3nh9:A, 3nha:A, 3nhb:A, 8yr3:A, 8yr3:B, 8yr4:B, 8yr4:A
18 2ej0:B 305 77 0.0872 0.0918 0.3636 6.0 2eiy:A, 2eiy:B, 2eiy:C, 2ej0:A, 2ej0:C, 2ej0:D, 2ej0:E, 2ej0:F, 2ej2:A, 2ej2:B, 2ej2:C, 2ej2:D, 2ej2:E, 2ej2:F, 2ej3:A, 2ej3:B, 2ej3:C, 1wrv:A, 1wrv:B, 1wrv:C
19 7ow1:H 219 54 0.0530 0.0776 0.3148 6.0 7oxn:H
20 4mcw:B 363 27 0.0343 0.0303 0.4074 6.7 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B
21 1s1e:A 181 33 0.0467 0.0829 0.4545 6.8 2i2r:E, 2i2r:F, 2i2r:G, 2i2r:H, 2i2r:M, 2i2r:N, 2i2r:O, 2i2r:P, 2nz0:A, 2nz0:C, 1s6c:A
22 1c12:A 214 38 0.0405 0.0607 0.3421 7.2 3g5v:A, 3g5y:A, 5xqw:L
23 6uzi:C 470 58 0.0592 0.0404 0.3276 8.1 6uzi:A, 6uzi:B, 6uzi:D
24 7ec3:A 500 52 0.0436 0.0280 0.2692 8.3 7ec3:C, 7ec6:A, 7ec7:A, 7ec7:B, 7vfl:A, 7vfl:C, 7vfm:A, 7vfm:C, 7vfn:A, 7vfo:A, 7vfo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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