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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNLSLITKLSQEDGAILFPEIDRYSDNKQIKALTQQITKVTVNGTVYKDLISDSVKDTNGWVSNMTGLHLGTKAFKDGEN
TIVISSKGFEDVTITVTKKDGQIHFVSAKQKQ

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dov:J 112 112 1.0000 1.0000 1.0000 8.03e-78 7cue:E, 7cue:F, 7cue:H, 8dov:K, 8dov:I
2 8qx2:B 217 41 0.1250 0.0645 0.3415 1.5 5ain:A, 5ain:B, 5ain:C, 5ain:D, 5ain:E, 4dbm:D, 5ke4:A, 5ke4:E, 5ke4:B, 5ke4:C, 5ke4:D, 5oa0:A, 5oa0:B, 5oa0:C, 5oa0:D, 5oa0:E, 5oaj:D, 5oaj:E, 5oaj:F, 5oaj:J, 5oal:A, 5oal:B, 5oal:C, 5oal:D, 5oal:E, 5oal:F, 5oal:G, 5oal:H, 5oal:I, 5oal:J, 5oal:K, 5oal:L, 5oal:O, 5oal:M, 5oal:N, 5oan:B, 5oan:C, 5oan:D, 5oan:E, 5obg:A, 5obg:B, 5obg:C, 5obg:D, 5obg:E, 5obh:A, 5obh:B, 5obh:C, 5obh:D, 5obh:E, 8q1m:C, 8qtl:D, 8qx2:D, 5syo:B, 5syo:C, 5syo:E, 6t9r:CCC, 5tsf:E, 5tvc:A, 5tvc:B, 5tvc:C, 5tvc:D, 5tvc:E, 5tvh:D, 2wn9:E, 2wnj:E, 4wv9:B, 4xhe:B, 2ymd:A, 2ymd:B, 2ymd:C, 2ymd:D, 2ymd:E, 2ymd:F, 2ymd:G, 2ymd:H, 2ymd:I, 2ymd:J, 4zk4:A, 4zk4:B, 4zk4:C, 4zk4:D, 4zk4:E
3 6l1h:B 305 42 0.0893 0.0328 0.2381 2.4 6l1h:A
4 3wgv:B 303 24 0.0804 0.0297 0.3750 2.7 7d92:B, 7d93:D, 7d94:D, 7ddf:B, 7ddf:D, 7ddh:B, 7ddh:D, 7ddk:B, 7ddk:D, 7ddl:B, 7ddl:D, 7e1z:B, 7e20:B, 7e21:B, 4hqj:B, 4hqj:D, 4hyt:B, 4hyt:D, 8jbk:B, 8jbk:D, 8jbl:B, 8jbl:D, 8jbm:D, 3kdp:B, 3kdp:D, 4ret:B, 3wgv:D, 7wys:B, 7wys:D, 7wyt:D, 4xe5:B
5 6r46:A 275 44 0.0893 0.0364 0.2273 2.8 6rnw:A
6 4zoh:C 161 36 0.0893 0.0621 0.2778 2.9
7 4zjs:B 206 31 0.1071 0.0583 0.3871 3.1 4zjs:D, 4zjs:E
8 6skf:BS 146 35 0.1071 0.0822 0.3429 4.1 6skg:BS, 6th6:BS
9 7cx0:B 603 22 0.0982 0.0182 0.5000 4.8 7cwz:A, 7cwz:B, 7cwz:C, 7cx0:A, 7cx0:C, 7cx1:A, 7cx1:B, 7cx1:C
10 8hsg:I 1096 80 0.2232 0.0228 0.3125 5.4 3aoi:C, 3aoi:H, 3aoi:M, 4gzy:C, 4gzz:C
11 2a68:C 1119 80 0.2232 0.0223 0.3125 5.4 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
12 3a59:A 141 52 0.1071 0.0851 0.2308 6.2 3a59:C, 3a59:E, 3a59:G, 3fs4:A, 3fs4:C
13 8jhz:A 2615 49 0.1250 0.0054 0.2857 7.2
14 8wr4:B 1442 32 0.1071 0.0083 0.3750 7.7
15 8wmm:B 1212 32 0.1071 0.0099 0.3750 8.1 8iyq:A, 8wmh:A, 8wmm:A, 8wmn:A, 8wmn:B, 8wr4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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