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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNFLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFWNKIAYSELEKVTPAEAFAG
TKAKLESFAAGVGTILLFEDQAVVRNLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEK
YDLPTNWKMRAQIPFGSIEAPAGEKEFMADQERFKVFGDLE

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ifa:B 201 201 1.0000 1.0000 1.0000 1.39e-148 2ifa:A, 2ifa:C, 2ifa:D, 2ifa:E, 2ifa:F
2 4bn9:A 191 195 0.4826 0.5079 0.4974 5.20e-64 4bn6:A, 4bn7:A, 4bn8:A, 4bnb:A, 2wqf:A
3 8cqv:A 202 197 0.4179 0.4158 0.4264 1.93e-54 8cqv:B
4 1ywq:A 199 197 0.3582 0.3618 0.3655 3.85e-46
5 3ge6:A 210 58 0.0945 0.0905 0.3276 0.034 3ge6:B
6 7nfc:A 3562 59 0.0697 0.0039 0.2373 0.50 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
7 7ojj:L 1785 48 0.0697 0.0078 0.2917 2.6
8 7ojl:L 1498 48 0.0697 0.0093 0.2917 2.7
9 7ojk:L 1843 48 0.0697 0.0076 0.2917 2.8
10 7ojn:L 2010 48 0.0697 0.0070 0.2917 2.8 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
11 3e39:A 175 129 0.1692 0.1943 0.2636 3.3 3e39:B
12 4xoq:A 204 62 0.0846 0.0833 0.2742 3.4 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
13 1wkr:A 340 111 0.1244 0.0735 0.2252 5.5
14 7och:L 1181 37 0.0547 0.0093 0.2973 7.1
15 7oe3:L 1478 37 0.0547 0.0074 0.2973 7.1 7oea:L, 7oeb:L
16 7qep:S4 259 35 0.0647 0.0502 0.3714 7.9
17 1v9n:A 348 66 0.1045 0.0603 0.3182 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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