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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNAVQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDSKRIDKV
LATKID

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2pls:I 86 86 1.0000 1.0000 1.0000 1.35e-58 2pls:G, 2pls:H, 2pls:J
2 3ded:C 91 82 0.4070 0.3846 0.4268 4.52e-20 3ded:A, 3ded:B, 3ded:D, 3ded:E, 3ded:F
3 2oai:A 80 83 0.3953 0.4250 0.4096 1.65e-19 2r8d:A
4 2p4p:B 77 74 0.2442 0.2727 0.2838 6.66e-12
5 4hg0:A 232 71 0.2093 0.0776 0.2535 0.003 3nqr:A, 3nqr:B, 3nqr:C, 3nqr:D, 5yz2:A, 5yz2:B
6 3lae:A 81 85 0.2326 0.2469 0.2353 0.017
7 2pli:A 84 75 0.1860 0.1905 0.2133 0.033 2pli:B, 2pli:C, 2pli:D
8 5h83:A 354 23 0.1279 0.0311 0.4783 3.6 5h83:B
9 2rg4:A 206 72 0.2093 0.0874 0.2500 4.2 2rg4:B
10 4o6o:D 199 32 0.1512 0.0653 0.4062 5.7 4o6o:A, 4o6o:B, 4o6o:C, 4o6p:B, 4o6p:C, 3vdp:A, 3vdp:B, 3vdp:C, 3vdp:D, 3vdu:A, 3ve5:D, 3ve5:A
11 5hau:1z 730 31 0.1047 0.0123 0.2903 6.4 2bm0:A, 2bm1:A, 1fnm:A, 6gzq:H1, 6gzx:H1, 6gzx:H2, 6gzz:H1, 6gzz:H2, 5hau:2z, 4m1k:A, 4myt:A, 4myu:A, 2om7:L, 5ot7:U, 6q95:G, 6ucq:1v, 6ucq:2v, 4v5f:AY, 4v5f:CY, 4v5m:AY, 4v5n:AY, 4v6t:AY, 4v8u:AY, 4v8u:CY, 4v90:AY, 4v9j:AY, 4v9j:CY, 4v9k:AY, 4v9k:CY, 4v9l:AY, 4v9l:CY, 4v9m:AY, 4v9m:CY, 4w29:AY, 4w29:CY, 4wpo:BZ, 4wpo:DZ, 4wqf:BZ, 4wqf:DZ, 4wqu:BZ, 4wqu:DZ, 4wqy:BZ, 4wqy:DZ
12 6kse:A 607 16 0.1047 0.0148 0.5625 7.7 6kse:B
13 7y4g:A 715 40 0.1512 0.0182 0.3250 9.8 8hay:A, 8hay:B, 8hay:C, 7y4g:B, 7y4g:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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