Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTSHSWLCDGRLLCLHDPSNKNNWKIFRECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQDVDLVNCRNCAIISDV
KVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTKRDGRLNLASRLPSYFVRPDLG
PKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKERIHDHKEKPGALWHIY
AAKDAEKIRELLRKVGEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSC
IKVAEDFVSPEHVKHCFRLT

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5r7x:B 344 339 0.9882 0.9767 0.9912 0.0 4c8d:A, 5r7x:A, 5raa:A, 5raa:B, 5rab:A, 5rab:B, 5rac:A, 5rac:B, 5rad:A, 5rad:B, 5rae:A, 5rae:B, 5raf:A, 5raf:B, 5rag:A, 5rag:B, 5rah:A, 5rah:B, 5rai:A, 5rai:B, 5raj:A, 5raj:B, 5rak:A, 5rak:B, 5ral:A, 5ral:B, 5ram:A, 5ram:B, 5ran:A, 5ran:B, 5rao:A, 5rao:B, 5rap:A, 5rap:B, 5raq:A, 5raq:B, 5rar:A, 5rar:B, 5ras:A, 5ras:B, 5rau:A, 5rau:B, 5rav:A, 5rav:B, 5raw:A, 5raw:B, 5rax:A, 5rax:B, 5ray:A, 5ray:B, 5raz:A, 5raz:B, 5rb0:A, 5rb0:B, 5rb1:A, 5rb1:B, 5rb2:A, 5rb2:B, 5rb3:A, 5rb3:B, 5rb4:A, 5rb4:B, 5rb5:A, 5rb5:B, 5rb6:A, 5rb6:B, 5rb7:A, 5rb7:B, 6rbj:A, 6rbj:B, 6ydv:AAA, 6ydv:BBB
2 5fzo:A 339 340 0.5647 0.5664 0.5647 1.93e-147 5fzo:B, 2ypd:A, 2ypd:B
3 6mev:A 341 34 0.0412 0.0411 0.4118 0.40 6gdy:A, 6gdy:B, 3ld8:A, 3ldb:A, 6mev:B, 6mev:C, 6mev:D, 6mev:E, 6mev:F, 6mev:G, 6mev:H
4 5b4x:A 710 118 0.0824 0.0394 0.2373 0.68 3a7q:A, 5b4x:C, 2e26:A
5 6nun:A 516 110 0.0794 0.0523 0.2455 2.0
6 7sx3:A 1386 82 0.0676 0.0166 0.2805 2.7 7sx4:A
7 6cfn:C 81 46 0.0412 0.1728 0.3043 3.7 6cfn:A, 6cfn:E, 6cfn:F, 5e6c:A, 3fyl:B, 3g6p:B, 3g6q:A, 3g6r:A, 3g6t:A, 3g6u:A, 3g6u:B, 3g8u:A, 3g8x:A, 3g8x:B, 3g99:A, 3g9i:A, 3g9i:B, 3g9j:B, 3g9m:A, 3g9m:B, 1glu:A, 1glu:B, 1r4o:A, 1r4o:B, 1r4r:B
8 6bjq:A 598 119 0.0882 0.0502 0.2521 7.5 6d4o:A, 8gen:A, 8geo:A, 8geq:A, 8ger:A, 8ugt:A
9 8fbc:A 393 105 0.0706 0.0611 0.2286 7.8 8fbc:B
10 3jb9:X 1195 44 0.0441 0.0126 0.3409 9.8
11 8hp3:A 298 28 0.0441 0.0503 0.5357 9.9 8hp3:B, 8hp3:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218