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BioLiP
>protein
SMTRRNIVGCRIQHGWKEGNEPVEQWKGTVLEQVSVKPTLYIIKYDGKDSVYGLELHRDKRVLALEILPERVPTPRIDSR
LADSLIGKAVEHVFETKDEWKGMVLARAPVMDTWFYITYEKDPVLYMYTLLDDYKDGDLRIIPDSNYYFPTAEQESLVGK
QVEHAKDDGSKRTGIFIHQVVAKPSVYFIKFDDDIHIYVYGLV

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uy4:B 208 208 1.0000 0.9760 0.9760 1.52e-146 4uy4:A
2 7bqz:A 215 209 0.7833 0.7395 0.7608 5.69e-111 7bqz:C, 7bqz:E, 7bqz:G, 7bu9:A, 7bu9:C, 7bu9:E, 7bu9:G, 7cna:D, 7cna:A, 7e9m:A, 7e9m:C, 7ea1:A, 8gtx:A, 4h75:A, 5jsg:A, 5jsg:B, 5jsj:A, 5jsj:B, 4mzf:B, 4mzg:B, 4mzg:D, 4mzh:A, 2ns2:A, 7ocb:B, 5y5w:A, 5y5w:C
3 5y5w:B 195 203 0.7192 0.7487 0.7192 1.08e-99 7ea1:C, 6i8b:B, 6i8b:E, 6i8l:B, 6i8y:A, 6qpl:B
4 5lug:A 207 205 0.6847 0.6715 0.6780 4.65e-99 5lug:D, 5lug:C, 5lug:B
5 6lx2:A 523 83 0.1281 0.0497 0.3133 0.020 6lx1:A
6 3gvj:A 670 76 0.1084 0.0328 0.2895 0.76 3gvk:A, 3gvk:B, 3gvk:C, 3gvl:A, 3ju4:A, 1v0f:C, 1v0f:D, 1v0f:E, 1v0f:A, 1v0f:B, 1v0f:F
7 8tzh:A 1485 60 0.0739 0.0101 0.2500 1.0 3d6t:B
8 4lv7:A 390 31 0.0591 0.0308 0.3871 2.6 3uds:A, 3uds:B
9 6phv:A 721 77 0.1034 0.0291 0.2727 3.4 6phw:A, 6phx:A, 6phy:A, 6pi0:A
10 6fl3:B 420 31 0.0591 0.0286 0.3871 5.6 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A
11 7eus:B 291 44 0.0542 0.0378 0.2500 5.6 7eus:A, 7eut:A, 7eut:B, 7euu:A, 7euu:B
12 7nhk:W 91 81 0.1084 0.2418 0.2716 5.7 6o8w:U, 6o8x:U, 6o8y:U, 6o8z:U, 6o90:U, 7p7q:W, 7p7r:W, 7p7s:W, 7p7t:W, 7p7u:W, 6w6p:U, 6wu9:U
13 1poy:1 323 45 0.0788 0.0495 0.3556 6.7 1pot:A, 1poy:2, 1poy:3, 1poy:4
14 8eug:I 170 126 0.1576 0.1882 0.2540 8.9 8eui:I
15 8qh3:A 1310 56 0.0788 0.0122 0.2857 9.2 8c4u:A, 8c4v:A, 8p1m:A, 8p1n:A, 8qgt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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