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BioLiP
>protein
SLRDLKEENRIVIWPSYFFSPTRSKGRRLARIPYKIKTEELVSTLRELGLDPIVIENKKYPRDRKINFLIAVKKVKSKNY
TLKIIHNALMGT

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ktw:B 93 92 1.0000 0.9892 1.0000 1.05e-62 3ktw:A
2 1l9a:A 87 58 0.2174 0.2299 0.3448 6.09e-04 1lng:A, 3ndb:A, 2v3c:A, 2v3c:B, 4xco:A, 4xco:B
3 4ncl:B 435 69 0.2609 0.0552 0.3478 0.096 4ncl:A, 4ncn:A, 4ncn:B, 4tmt:A, 4tmt:B, 4tmv:B, 4tmv:A, 4tmw:A, 4tmw:B, 4tmx:A, 4tmx:B, 4tmz:B, 4tmz:A, 4tn1:B, 4tn1:A
4 4v8z:CV 568 69 0.2717 0.0440 0.3623 0.65
5 6woo:1 600 69 0.2717 0.0417 0.3623 0.72 4ncf:A, 4ncf:B, 3wbk:A
6 4jd0:A 245 41 0.1413 0.0531 0.3171 1.1
7 8om5:A 828 49 0.1848 0.0205 0.3469 1.1 8omo:A
8 8ag6:A 896 49 0.1848 0.0190 0.3469 1.2 2o8b:A, 2o8c:A, 2o8d:A, 2o8e:A, 2o8f:A, 8olx:A, 8om9:A, 8oma:A, 8omq:A, 3thw:A, 3thx:A, 3thy:A, 3thz:A
9 8fpf:D 666 62 0.1957 0.0270 0.2903 1.6 8fhk:D, 8fmv:D, 7m33:D, 8szc:D, 8t1p:D, 8t3k:D
10 5abd:E 95 48 0.1413 0.1368 0.2708 2.0 5abd:I, 5abd:X, 4ckv:X, 4cl7:A, 4cl7:C, 4cl7:B, 4cl7:D
11 3aq5:A 117 31 0.1304 0.1026 0.3871 2.7 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
12 6hum:I 193 24 0.0978 0.0466 0.3750 3.0 6khi:I, 6khj:I, 6l7o:I, 6l7p:I, 6nbq:I, 6nbx:I, 6nby:I, 6tjv:I
13 7blz:1 173 21 0.1087 0.0578 0.4762 3.6 8wey:1, 8wey:4, 5zgb:1, 5zgb:4, 5zgh:1
14 6uz7:1 600 57 0.2065 0.0317 0.3333 4.5 4v8y:CP
15 1eth:A 448 37 0.1304 0.0268 0.3243 5.2 1eth:C
16 3tz6:A 342 50 0.1848 0.0497 0.3400 5.9 3vos:A
17 6ojz:D 361 31 0.1630 0.0416 0.4839 6.1 6ojx:A, 6ojx:B, 6ojx:C, 6ojz:A, 6ojz:B, 6ojz:C, 6ojz:E, 6ojz:F, 6ok2:A, 6ok2:B, 6ok2:C, 6ok2:D, 6ok2:E, 6ok2:F, 6okv:A, 6okv:B, 6okv:C, 6okv:D, 6okv:E, 6okv:F, 6olm:A, 6olm:B, 6olm:C, 6olm:D, 6olm:E, 6olm:F
18 7t09:B 497 48 0.1957 0.0362 0.3750 7.8 3q73:B, 3q75:B, 3q78:B, 3q79:B, 3q7a:B, 3q7f:B, 3sfx:B, 3sfy:B, 7t08:B, 7t0a:B, 7t0b:B, 7t0c:B, 7t0d:B, 7t0e:B, 8t70:B
19 7xsu:A 1085 16 0.1196 0.0101 0.6875 9.1
20 6uz3:A 1126 16 0.1196 0.0098 0.6875 9.1 7fbs:A
21 2ejt:A 371 32 0.1739 0.0431 0.5000 9.2 2eju:A, 2ytz:A, 2ytz:B
22 6rxt:UD 772 20 0.1087 0.0130 0.5000 9.2 6rxu:UD, 6rxv:UD, 6rxx:UD, 6rxy:UD, 6rxz:UD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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