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BioLiP
>protein
SLLHTFWRLPVAVFFEPHEENVLRCPERVLRRLLEDAAVTMRGGGWREDVLMDRVRKRYLRQELRDLGHRVQTYCE

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7etj:N 76 76 1.0000 1.0000 1.0000 1.45e-51 7et3:N, 7eto:N
2 7et3:O 69 76 0.8553 0.9420 0.8553 2.98e-39 7etj:O, 7eto:O
3 3rpl:B 349 23 0.1579 0.0344 0.5217 0.47 3roj:A, 3roj:B, 3roj:C, 3roj:D, 3rpl:A, 3rpl:C, 3rpl:D
4 5a5l:A 338 23 0.1711 0.0385 0.5652 0.95
5 7wbb:F 699 24 0.1447 0.0157 0.4583 1.8
6 7ykk:E 735 24 0.1447 0.0150 0.4583 1.8 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
7 1r6v:A 671 20 0.1184 0.0134 0.4500 3.9
8 7b0n:G 694 34 0.1974 0.0216 0.4412 5.5 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
9 7mq8:LJ 469 23 0.1316 0.0213 0.4348 5.6 7mq9:LJ, 7mqa:LJ
10 3muo:A 684 30 0.1447 0.0161 0.3667 6.3 3iuq:A, 3iur:A, 3ivm:A
11 4jay:A 338 52 0.2105 0.0473 0.3077 7.1 4jay:B, 4jay:C, 4jay:D, 4jb1:A, 7or2:A, 7orz:A, 7osq:A
12 8xvb:C 246 40 0.2105 0.0650 0.4000 9.3 8xvb:D, 8xvb:F, 8xvb:G, 8xvb:H, 8xvb:A, 8xvb:B, 8xvb:E, 8xvc:A, 8xvc:B, 8xvc:C, 8xvc:D, 8xvc:E, 8xvc:F, 8xvc:G, 8xvc:H, 8xvc:I, 8xvc:J, 8xvc:K, 8xvc:L, 8xvc:M, 8xvc:N, 8xvc:O, 8xvc:P, 8xvc:Q, 8xvc:R, 8xvd:A, 8xvd:B, 8xvd:C, 8xvd:D, 8xvd:E, 8xvd:F, 8xvd:G, 8xvd:H, 8xvd:I, 8xvd:J, 8xvd:K, 8xvd:L, 8xvd:M, 8xvd:N, 8xvd:O, 8xvd:P, 8xvd:Q, 8xvd:R, 8xvd:S, 8xvd:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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