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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLLHTFWRLPVAVFFEPHEENVLRCPERVLRRLLEDAAVTMDRVRKRYLRQELRDLGHRVQTYCEDLEG

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7et3:O 69 69 1.0000 1.0000 1.0000 5.22e-46 7etj:O, 7eto:O
2 7etj:N 76 76 0.9420 0.8553 0.8553 2.71e-39 7et3:N, 7eto:N
3 3rpl:B 349 31 0.2029 0.0401 0.4516 0.11 3roj:A, 3roj:B, 3roj:C, 3roj:D, 3rpl:A, 3rpl:C, 3rpl:D
4 5a5l:A 338 42 0.2609 0.0533 0.4286 0.16
5 3c4q:A 393 57 0.2464 0.0433 0.2982 1.9 3c4q:B, 3c4v:A, 3c4v:B
6 7b0n:G 694 18 0.1594 0.0159 0.6111 2.2 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
7 5fad:A 160 20 0.1449 0.0625 0.5000 2.9 5fa8:A
8 5hsj:A 606 38 0.2029 0.0231 0.3684 3.0 5hsj:B
9 7oik:A 4426 36 0.2029 0.0032 0.3889 3.2 7oim:A, 6tax:A, 6tay:A
10 4nmc:A 941 16 0.1594 0.0117 0.6875 4.1
11 7wbb:F 699 22 0.1449 0.0143 0.4545 4.6
12 7ykk:E 735 22 0.1449 0.0136 0.4545 4.6 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
13 3kfu:C 377 65 0.2609 0.0477 0.2769 6.2 3kfu:A, 3kfu:D, 3kfu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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