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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNPDHVEENRKRLFAAGNLPSKPVWLEQVHGKDVLKLTGE
PYASKRADASYSNTPGTVCAVMTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPRA
FEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKTTGRMASFIW
LI

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1u05:A 243 242 1.0000 0.9959 1.0000 0.0 7f3v:A, 7f3v:B, 7f3v:C, 7f3v:D, 1u05:B, 7w1g:A, 7w1g:B, 7w1g:C, 7w1g:D, 1xaf:A, 1xaf:B
2 1t8h:A 272 246 0.3430 0.3051 0.3374 3.95e-31 6t0y:A, 6t1b:A
3 6dzd:A 269 262 0.3512 0.3160 0.3244 2.32e-30 6dzd:B
4 7fbg:A 268 256 0.2975 0.2687 0.2812 2.65e-23
5 8uzv:A 442 56 0.0661 0.0362 0.2857 5.1 9b3b:A, 9b3b:B, 8cvq:A, 8cvq:B, 8cw2:A, 8cw2:B, 6dhu:A, 6dhu:B, 6die:A, 6die:B, 6dih:A, 6dih:B, 6dim:A, 6dim:B, 6djd:A, 6djd:B, 6dje:A, 6dje:B, 6djf:A, 6djf:B, 6djg:A, 6djg:B, 6djh:A, 6djh:B, 6dji:A, 6dji:B, 6djj:A, 6djj:B, 6mj5:A, 6mj5:B, 1mu7:A, 1mu7:B, 1mu9:A, 1mu9:B, 6myz:A, 6mz0:A, 6mz0:B, 6n0d:A, 6n0d:B, 6n0n:A, 6n0n:B, 6n0o:A, 6n0o:B, 6n0r:A, 6n0r:B, 6n17:A, 6n17:B, 6n19:A, 6n19:B, 1nop:A, 1nop:B, 5nw9:A, 5nwa:A, 1rff:A, 1rff:B, 1rfi:A, 1rfi:B, 1rg1:A, 1rg1:B, 1rg2:A, 1rg2:B, 1rgt:A, 1rgt:B, 1rgu:A, 1rgu:B, 1rh0:A, 1rh0:B, 7ufy:A, 7ufy:B, 7ufz:A, 7ufz:B, 8uv1:A, 8uv1:B, 8uzv:B, 8uzz:A, 8uzz:B, 8v0b:A, 8v0b:B, 8v0c:A, 8v0c:B, 6w4r:A, 6w4r:B, 6w7j:A, 6w7j:B, 6w7k:A, 6w7k:B, 6w7l:A, 6w7l:B
6 2isa:A 482 30 0.0496 0.0249 0.4000 5.6 2isa:B, 2isa:C, 2isa:D, 2isa:E, 2isa:F, 2isa:G, 2isa:H
7 1a4e:A 488 39 0.0496 0.0246 0.3077 8.6 1a4e:B, 1a4e:C, 1a4e:D
8 3afk:A 167 25 0.0413 0.0599 0.4000 8.8 3afk:B, 3m3c:A, 3m3c:B, 3m3e:A, 3m3e:B, 3m3e:C, 3m3e:D, 3m3o:A, 3m3q:A, 3m3q:B, 2zgm:A, 2zgm:B, 2zgn:B, 2zgo:A, 2zgo:B
9 5ub4:B 279 49 0.0620 0.0538 0.3061 8.9 5ub4:A, 5ub6:A, 5ub6:B, 5ub7:A, 5ub7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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