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BioLiP
>protein
SKHELSLVEVTHYTDPEVLAIVKDFHVRGNFASLPEFAERTFVSAVPLAHLEKFENKEVLFRPGFSSVINISSSHNFSRE
RLPSGINFCDKNKLSIRTIEKLLVNAFSSPDPGSVRRPYPSGGALYPIEVFLCRLSENTENWQAGTNVYHYLPLSQALEP
VATCNTQSLYRSLSGGDSERLGKPHFALVYCIIFEKALFKYRYRGYRMALMETGSMYQNAVLVADQIGLKNRVWAGYTDS
YVAKTMNLDQRTVAPLIVQFFGDVND

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6grh:C 266 266 1.0000 1.0000 1.0000 0.0 6gos:C, 6grg:C, 6gri:C
2 5lq4:B 465 132 0.1729 0.0989 0.3485 8.05e-11 5lq4:A, 8pz5:A, 8pz5:B
3 3eo7:A 487 158 0.1391 0.0760 0.2342 0.001
4 7ly7:B 329 147 0.1466 0.1185 0.2653 0.10 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
5 8dve:G 3944 97 0.1128 0.0076 0.3093 0.13 8dtb:A, 8dve:D, 8dve:A, 8dve:J
6 8duj:G 3933 97 0.1128 0.0076 0.3093 0.13
7 5vcs:B 323 64 0.0752 0.0619 0.3125 2.6
8 7ela:A 1402 50 0.0564 0.0107 0.3000 3.1
9 7ckl:A 1415 50 0.0564 0.0106 0.3000 3.1
10 6klc:A 1436 50 0.0564 0.0104 0.3000 3.1
11 4kl8:S 279 57 0.0564 0.0538 0.2632 3.2 1cc1:S, 4kl8:T, 4kn9:S, 4kn9:T, 4ko1:S, 4ko1:T, 4ko2:S, 4ko2:T, 4ko3:S, 4ko3:T, 4ko4:S, 4ko4:T
12 5vcm:B 358 64 0.0752 0.0559 0.3125 3.6 5vcm:A, 5vcs:A
13 5fql:A 507 44 0.0602 0.0316 0.3636 4.0 6ioz:A
14 7ojj:L 1785 50 0.0564 0.0084 0.3000 4.6
15 7ojn:L 2010 50 0.0564 0.0075 0.3000 4.7 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
16 7ojk:L 1843 50 0.0564 0.0081 0.3000 4.9
17 3m0j:A 297 57 0.0714 0.0640 0.3333 4.9 3lye:A, 3m0k:A
18 7ojl:L 1498 50 0.0564 0.0100 0.3000 5.1
19 5axu:A 247 128 0.1128 0.1215 0.2344 5.3 5axv:A, 5exy:A, 5exz:A, 5gqi:A, 5gqj:A, 5gql:A, 5gqm:A, 2oh5:A, 2oh6:A, 2oh7:A, 5yha:A
20 7oe3:L 1478 50 0.0564 0.0101 0.3000 5.8 7oea:L, 7oeb:L
21 8duj:D 3865 100 0.1128 0.0078 0.3000 5.9
22 6ns4:A 685 65 0.0677 0.0263 0.2769 5.9 6ns3:A, 6ns4:B, 6ns5:A, 6ns5:B, 6ns6:A, 6ns6:B
23 7och:L 1181 50 0.0564 0.0127 0.3000 6.1
24 8duj:J 3892 100 0.1128 0.0077 0.3000 6.3
25 6wot:A 4197 51 0.0752 0.0048 0.3922 7.4 6wot:B, 6wot:C, 6wot:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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