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BioLiP
>protein
SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3f21:A 67 64 1.0000 0.9552 1.0000 1.01e-41 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
2 2acj:A 53 58 0.7656 0.9245 0.8448 1.66e-27 5zuo:A, 5zup:A
3 5zu1:D 47 58 0.6719 0.9149 0.7414 2.86e-21
4 7c0i:B 67 39 0.3594 0.3433 0.5897 2.33e-09 7c0i:A, 7c0i:C
5 4kmf:A 62 58 0.2656 0.2742 0.2931 4.88e-05
6 1sfu:A 70 46 0.2812 0.2571 0.3913 1.66e-04 1sfu:B
7 2heo:A 59 58 0.3125 0.3390 0.3448 7.45e-04 2heo:D, 1j75:A
8 7c0j:B 62 29 0.2656 0.2742 0.5862 0.002 7c0j:A
9 4lb5:B 63 60 0.2969 0.3016 0.3167 0.023 4lb5:A, 4lb6:B
10 4ev0:D 214 50 0.2656 0.0794 0.3400 0.17 4ev0:A
11 3qph:A 335 40 0.1875 0.0358 0.3000 1.6 2f5t:X
12 3byr:A 89 29 0.1719 0.1236 0.3793 2.0
13 6zj3:LT 190 28 0.1875 0.0632 0.4286 5.2
14 1c3r:A 372 51 0.2969 0.0511 0.3725 5.5 1c3r:B, 1c3s:A
15 8inz:C 465 34 0.1719 0.0237 0.3235 9.6 8inz:A, 8inz:B, 8inz:D, 8io3:C, 8io3:A, 8io3:B, 8io3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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