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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIYKVENRHDYGTKGTKVDILTGSGRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQVNLR
AIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQPTFETSPGEISLLNLLENIPSNT
YILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLP
ILVLGSDVTHYPEKDQNSIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDG
VSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVV
DRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCF
FKAGFELNMAQATVSKNVLLPQVNDNIKSVMYYI

The query sequence (length=514) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f1n:A 904 489 0.9455 0.5376 0.9939 0.0 5the:A, 5the:C, 5the:E, 5the:G
2 4f1n:A 904 43 0.0486 0.0277 0.5814 8.78e-06 5the:A, 5the:C, 5the:E, 5the:G
3 4f1n:B 853 489 0.9436 0.5686 0.9918 0.0
4 4f1n:B 853 43 0.0486 0.0293 0.5814 8.57e-06
5 7sva:A 792 366 0.2354 0.1528 0.3306 7.32e-50 7swf:A, 7swq:A
6 4krf:A 817 455 0.2685 0.1689 0.3033 3.51e-49 4kre:A, 4kxt:A, 1si2:A, 1si3:A, 5w6v:A
7 5vm9:C 785 493 0.2899 0.1898 0.3022 1.96e-48 5vm9:A
8 6cbd:A 787 425 0.2529 0.1652 0.3059 2.01e-48 5wea:A
9 6oon:A 785 452 0.2704 0.1771 0.3075 2.29e-46
10 8d6j:A 810 426 0.2529 0.1605 0.3052 5.92e-46 9bez:A, 9bez:B, 9bez:C, 9bf0:A, 9bf0:B, 9bf0:C, 9bf2:A, 9bf2:B, 9bf2:C, 7c6b:A, 7c6b:B, 7c6b:C, 7d7u:A, 7d7u:B, 7d7u:C, 8d71:A, 4f3t:A, 5js1:A, 5js2:A, 5ki6:A, 7ki3:A, 7ki3:D, 3luc:A, 3luc:B, 3luc:C, 3lud:A, 3lud:B, 3lud:C, 3lug:A, 3lug:B, 3lug:C, 3luh:A, 3luh:B, 3luh:C, 3luj:A, 3luj:B, 3luj:C, 3luk:A, 3luk:B, 3luk:C, 6mdz:A, 6mdz:B, 6mfn:A, 6mfr:A, 6mfr:B, 6n4o:A, 6nit:A, 6nit:B, 4ola:A, 4olb:A, 3qx8:A, 3qx8:B, 3qx8:C, 3qx9:A, 3qx9:B, 3qx9:C, 6ra4:A, 6ra4:B, 5t7b:A, 4w5n:A, 4w5o:A, 4w5q:A, 4w5r:A, 4w5t:A, 4z4c:A, 4z4d:A, 4z4e:A, 4z4f:A, 4z4g:A, 4z4h:A, 4z4i:A
11 7yfx:A 746 265 0.1401 0.0965 0.2717 2.06e-23 7yfy:A, 7ygn:A
12 7kx9:A 734 271 0.1459 0.1022 0.2768 3.26e-17 7kx7:A, 7yfq:A, 7yg6:A
13 5guh:A 759 335 0.1615 0.1094 0.2478 2.96e-14
14 8r3z:A 755 377 0.1712 0.1166 0.2334 9.95e-14
15 6kr6:A 713 236 0.1167 0.0842 0.2542 3.12e-13
16 3vnb:A 149 63 0.0389 0.1342 0.3175 0.004 4g0p:A, 4g0q:A, 4g0y:A, 4g0z:A, 3vna:A
17 8in8:C 470 111 0.0584 0.0638 0.2703 0.075 8jl0:B, 8k87:A, 8k87:F, 8k88:A
18 5djs:A 520 75 0.0506 0.0500 0.3467 1.0 5djs:B, 5djs:C, 5djs:D
19 5n28:B 443 45 0.0311 0.0361 0.3556 2.3 5n28:E, 5n2a:B
20 4c5i:A 423 96 0.0486 0.0591 0.2604 2.4
21 4fpv:B 257 54 0.0292 0.0584 0.2778 2.6 6ca4:A, 6ca4:B, 4f1h:A, 4f1h:B, 4fpv:A
22 7nvo:D 247 57 0.0331 0.0688 0.2982 3.3 7nvo:d
23 3l0a:A 266 74 0.0428 0.0827 0.2973 3.7
24 7x3j:D 469 57 0.0331 0.0362 0.2982 4.5
25 8sfe:d 489 57 0.0331 0.0348 0.2982 4.5 8sfe:D
26 7x0s:I 521 57 0.0331 0.0326 0.2982 4.9 8i1u:D, 8i1u:L, 8i9u:D, 8i9u:L, 7nvl:D, 7nvl:d, 7nvm:D, 7nvm:d, 7nvn:D, 7nvn:d, 8sff:D, 8sff:d, 8sg8:D, 8sg8:d, 8sg9:D, 8sg9:d, 8sgc:D, 8sgc:d, 8sgl:D, 8sgl:d, 8sgq:D, 8sgq:d, 8sh9:D, 8sh9:d, 8sha:D, 8sha:d, 8shd:D, 8shd:d, 8she:D, 8she:d, 8shf:D, 8shf:d, 8shg:D, 8shg:d, 8shl:D, 8shl:d, 8shn:D, 8shn:d, 8sho:D, 8sho:d, 8shp:D, 8shp:d, 8shq:D, 8shq:d, 8sht:D, 8sht:d, 7trg:F, 7ttn:F, 7ttt:F, 7tub:F, 7x0s:M, 7x0v:I, 7x0v:M, 7x3j:d, 7x3u:d
27 7x3u:D 439 57 0.0331 0.0387 0.2982 5.4
28 1t9h:A 287 50 0.0350 0.0627 0.3600 6.4
29 5vyq:A 235 69 0.0331 0.0723 0.2464 7.0 4q12:A, 4q12:B, 5vyq:B
30 7c7d:A 539 43 0.0311 0.0297 0.3721 7.6 7c7d:B
31 6p0g:A 173 27 0.0195 0.0578 0.3704 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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