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BioLiP
>protein
SIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSS
TLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKN

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vwb:A 116 114 1.0000 0.9828 1.0000 9.30e-78 3w2a:A, 3w3c:A
2 2ntz:A 183 113 0.4649 0.2896 0.4690 4.92e-24 2ntz:B, 1zx4:A
3 3mkw:B 115 36 0.1140 0.1130 0.3611 0.10 3mky:B, 3mkz:A, 3mkz:N, 3mkz:U
4 3hrd:G 292 37 0.1228 0.0479 0.3784 0.32 3hrd:C
5 8ai8:A 183 26 0.0965 0.0601 0.4231 3.8 8ai8:B, 8ai9:A, 8ai9:B, 8aib:A, 8aib:B, 7pka:A, 7pka:B
6 3jb9:B 904 69 0.1842 0.0232 0.3043 5.7
7 6sga:Fb 129 54 0.1228 0.1085 0.2593 6.8 7pua:Fb, 6sgb:Fb
8 5mm7:K 397 73 0.1754 0.0504 0.2740 8.3 5mm4:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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