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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SINPWILTGFADAEGSFLLRIRNNNKSSVGYSTELGFQITLHNKDKSILENIQSTWKVGVIANSGDNAVSLKVTRFEDLK
VIIDHFEKYPLITQKLGDYMLFKQAFCVMENKEHLKINGIKELVRIKAKLNWGLTDELKFAFPEIISKERSLINKNIPNF
KWLAGFTSGEGCFFVNLIKSKSKLGVQVQLVFSITQHIKDKNLMNSLITYLGCGYIKEKNKSEFSWLDFVVTKFSDINDK
IIPVFQENTLIGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGRVF

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bd0:A 300 295 0.9898 0.9733 0.9898 0.0 6bda:A, 6bdb:A, 3qqy:A, 6uvw:A, 6uvw:D, 6uwg:A, 6uwh:A, 6uwj:A
2 6uw0:B 295 293 0.8949 0.8949 0.9010 0.0 6uw0:A, 6uwk:A
3 4yhx:A 294 294 0.8508 0.8537 0.8537 0.0
4 5t2h:A 296 295 0.8508 0.8480 0.8508 1.28e-179
5 5t2n:A 291 293 0.8542 0.8660 0.8601 2.16e-179
6 5t8d:A 292 293 0.8305 0.8390 0.8362 1.83e-173 5v0q:A
7 5thg:A 294 295 0.8271 0.8299 0.8271 1.92e-172 5thg:D
8 5t2o:A 293 295 0.8136 0.8191 0.8136 5.71e-170
9 7rcf:A 290 293 0.8068 0.8207 0.8123 2.32e-167 7rcc:D, 7rcc:A, 7rcc:G, 7rcd:A, 7rce:A, 7rcg:A
10 6bci:A 292 298 0.4949 0.5000 0.4899 1.46e-96 6bce:A, 6bcf:D, 6bcf:A, 6bcf:G, 6bcf:J, 6bcg:D, 6bcg:A, 6bcg:G, 6bcg:J, 6bch:A, 6bch:D, 6bch:H, 6bch:L, 6bcn:A, 6bcn:C, 6bcn:G, 6bcn:J, 6bct:A, 3r7p:A
11 4lox:A 300 297 0.4712 0.4633 0.4680 6.78e-88 5e5o:A, 5e5s:A, 5e63:A, 5e67:A, 4z1z:A, 4z1z:B, 4z20:A, 4z20:D
12 4yit:D 277 292 0.4203 0.4477 0.4247 1.50e-77 4yit:A
13 4efj:B 291 298 0.4508 0.4570 0.4463 1.80e-74 4efj:A, 4z1x:B, 4z1x:A
14 5esp:A 292 296 0.4508 0.4555 0.4493 1.05e-72 5esp:B
15 4yis:A 295 295 0.4339 0.4339 0.4339 4.42e-71 4yis:B
16 4lq0:A 298 294 0.4102 0.4060 0.4116 3.10e-69
17 4lq0:A 298 133 0.1627 0.1611 0.3609 3.86e-17
18 3e54:A 159 127 0.1288 0.2390 0.2992 2.32e-07 3e54:B
19 3eh8:A 254 173 0.1525 0.1772 0.2601 7.05e-06 3eh8:D, 3eh8:G, 1p8k:Z, 2qoj:Z
20 3eh8:A 254 100 0.0780 0.0906 0.2300 0.041 3eh8:D, 3eh8:G, 1p8k:Z, 2qoj:Z
21 3mxa:A 301 214 0.1695 0.1661 0.2336 1.65e-05 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
22 3mxa:A 301 58 0.0542 0.0532 0.2759 0.008 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
23 3mxa:A 301 95 0.0644 0.0631 0.2000 0.43 4aab:A, 4aab:B, 4aad:A, 4aad:B, 4aae:A, 4aae:B, 4aaf:A, 4aaf:B, 4aag:A, 4aag:B, 4aqu:A, 4aqu:B, 4aqx:A, 4aqx:B, 1bp7:A, 1bp7:B, 1bp7:C, 1bp7:D, 6fb0:A, 6fb0:B, 6fb1:A, 6fb1:B, 6fb2:A, 6fb2:B, 6fb5:A, 6fb5:B, 6fb6:A, 6fb6:B, 6fb7:A, 6fb7:B, 6fb8:A, 6fb8:B, 6fb9:A, 6fb9:B, 1g9y:A, 1g9y:B, 1g9z:A, 1g9z:B, 2i3p:A, 2i3p:B, 2i3q:A, 2i3q:B, 3mx9:A, 3mxb:A, 3mxb:B, 3mxb:R, 3mxb:S, 1n3e:A, 1n3e:B, 1n3e:G, 1n3e:H, 1n3f:A, 1n3f:B, 1n3f:G, 1n3f:H, 1t9i:A, 1t9i:B, 1t9j:A, 1t9j:B, 1u0c:A, 1u0c:B, 1u0d:A, 1u0d:B, 2vbj:A, 2vbj:B, 2vbl:A, 2vbl:B, 2vbn:A, 2vbn:B, 2vbo:A, 2vbo:B, 2xe0:A, 2xe0:B
24 3uvf:A 255 173 0.1559 0.1804 0.2659 2.81e-04 3uvf:B
25 3uvf:A 255 99 0.0746 0.0863 0.2222 0.47 3uvf:B
26 5a72:B 158 85 0.0678 0.1266 0.2353 8.99e-04 5a72:A, 5a74:A, 5a74:B, 5a77:A, 5a77:B, 5a78:A, 5a78:B
27 1mow:A 248 154 0.1153 0.1371 0.2208 0.004 1mow:D, 1mow:G, 1mow:J
28 1mow:A 248 59 0.0508 0.0605 0.2542 0.97 1mow:D, 1mow:G, 1mow:J
29 2ex5:A 207 87 0.0746 0.1063 0.2529 0.008 2ex5:B
30 1ox4:B 538 122 0.1153 0.0632 0.2787 0.32 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
31 8egs:Y 586 88 0.0881 0.0444 0.2955 1.1
32 2cia:A 98 93 0.0712 0.2143 0.2258 1.4
33 8h0d:A 390 70 0.0678 0.0513 0.2857 2.4 8h09:A, 8h09:B, 8h0a:B, 8h0b:B, 8h0c:A, 8h0c:B, 8h0d:B
34 1dq3:A 454 12 0.0305 0.0198 0.7500 3.5
35 4im7:A 483 100 0.0746 0.0455 0.2200 5.4
36 7r81:J1 236 55 0.0508 0.0636 0.2727 6.9
37 6ks6:A 550 106 0.0915 0.0491 0.2547 9.4 6ks6:a, 4v81:A, 4v81:a, 4v8r:AA, 4v8r:Aa, 4v8r:BA, 4v8r:Ba, 4v94:A, 4v94:I, 4v94:a, 4v94:i, 7ylw:A, 7ylw:a, 7ylx:A, 7ylx:a, 7yly:A, 7yly:a

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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