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BioLiP
>protein
SIKKTLFVVIALSLVCSIIVSAAAVGLRDKQKENAALDKQSKILQVAGIEAKGSKQIVELFNKSIEPRLVDFNTGDFVEG
DAANYDQRKAAKEASESIKLTAEQDKAKIQRRANVGVVYLVKDGDKTSKVILPVHGNGLWSMMYAFVAVETDGNTVSGLT
YYEQGETPGLGGEVENPAWRAQWVGKKLFDENHKPAIKIVKGGAPQGSEHGVDGLSGATLTSNGVQNTFDFWLGDMGFGP
FLTKVRDG

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a1y:C 253 248 1.0000 0.9802 1.0000 0.0 8a1t:C, 8a1u:C, 8a1v:C, 8a1w:C, 8a1x:C, 8acw:C, 8acy:C, 8ad0:C, 8evu:C, 8ew3:C, 4u9s:C, 7xk3:C, 7xk4:C, 7xk5:C, 7xk6:C, 7xk7:C
2 4xa7:A 226 224 0.7419 0.8142 0.8214 2.86e-133
3 4xhf:B 225 210 0.3629 0.4000 0.4286 1.69e-52 4xhf:A, 4xhf:C, 4xhf:D
4 7zc6:G 187 155 0.1774 0.2353 0.2839 9.07e-06
5 6jn7:A 262 114 0.1210 0.1145 0.2632 1.4 7e60:A, 7e61:A, 7e63:A, 7e63:B, 7e64:A, 7e65:A, 7e65:B, 7e66:A, 7e67:A, 7e69:A, 6jmx:A, 6jmy:A, 6jmz:A, 6jn0:A, 6jn1:A, 6jn7:B, 6jn7:C, 6jn8:A, 6kv1:A
6 7tbw:A 1928 49 0.0645 0.0083 0.3265 6.4
7 6f8z:A 715 100 0.0887 0.0308 0.2200 9.8 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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