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BioLiP
>protein
SHMEQRILKFLGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zu1:D 47 47 1.0000 1.0000 1.0000 1.13e-28
2 2acj:A 53 52 0.9574 0.8491 0.8654 7.26e-25 5zuo:A, 5zup:A
3 3f21:A 67 59 0.9362 0.6567 0.7458 4.42e-22 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
4 7c0i:B 67 32 0.4255 0.2985 0.6250 6.45e-08 7c0i:A, 7c0i:C
5 7c0j:B 62 30 0.3830 0.2903 0.6000 2.77e-04 7c0j:A
6 4kmf:A 62 58 0.3617 0.2742 0.2931 0.002
7 2heo:A 59 60 0.3830 0.3051 0.3000 0.033 2heo:D, 1j75:A
8 1sfu:A 70 33 0.2553 0.1714 0.3636 0.44 1sfu:B
9 6zj3:LT 190 26 0.2553 0.0632 0.4615 1.4
10 1pjq:B 455 36 0.2979 0.0308 0.3889 1.7 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
11 1xp3:A 297 28 0.2340 0.0370 0.3929 2.4
12 6wbf:A 344 18 0.1702 0.0233 0.4444 6.9 7f8j:A, 7f8j:G, 7f8j:B, 7f8j:C, 7f8j:D, 7f8j:E, 7f8j:F, 7f8n:A, 7f8n:B, 7f8n:C, 7f8n:D, 7f8n:E, 7f8n:F, 7f8n:G, 7f8o:A, 7f8o:B, 7f8o:C, 7f8o:D, 7f8o:E, 7f8o:F, 7f8o:G, 8gyo:A, 8gyo:B, 8gyo:D, 8gyo:E, 8gyo:F, 6wbf:B, 6wbf:C, 6wbf:D, 6wbf:E, 6wbf:F, 6wbf:G, 6wbg:A, 6wbg:B, 6wbg:C, 6wbg:D, 6wbg:E, 6wbg:F, 6wbg:G
13 6syt:A 1896 22 0.1915 0.0047 0.4091 7.1
14 7pw9:A 1952 22 0.1915 0.0046 0.4091 7.4 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
15 6agi:B 322 19 0.2128 0.0311 0.5263 8.8 6agi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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