Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQAAE

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1mwz:A 73 73 1.0000 1.0000 1.0000 1.31e-48
2 4a48:B 69 63 0.3151 0.3333 0.3651 2.02e-09 4a48:A, 4a4j:A, 2xmw:A
3 1oq6:A 76 63 0.2877 0.2763 0.3333 1.14e-07
4 1kqk:A 80 64 0.3151 0.2875 0.3594 3.03e-06
5 1afj:A 72 63 0.3288 0.3333 0.3810 4.74e-05
6 1fvs:A 72 64 0.2603 0.2639 0.2969 8.60e-05 2ggp:B
7 6a71:B 71 31 0.1781 0.1831 0.4194 2.30e-04 6a72:A
8 1k0v:A 73 63 0.2877 0.2877 0.3333 5.49e-04 3i9z:A, 2qif:A, 2qif:B
9 1yjt:A 75 43 0.2055 0.2000 0.3488 0.002 1yjv:A
10 4y2i:A 65 63 0.2740 0.3077 0.3175 0.002
11 8ioy:A 816 43 0.1918 0.0172 0.3256 0.002
12 7si6:A 873 43 0.2055 0.0172 0.3488 0.007 7si3:A, 7si7:A
13 2nyt:B 190 62 0.2466 0.0947 0.2903 0.013 2nyt:A, 2nyt:C, 2nyt:D
14 2rpz:A 192 62 0.2329 0.0885 0.2742 0.020
15 3dxs:X 74 28 0.1781 0.1757 0.4643 0.11
16 1kvj:A 79 54 0.1918 0.1772 0.2593 0.23 3cjk:B, 2k1r:A, 5t7l:B
17 4yuu:o2 245 54 0.2466 0.0735 0.3333 0.50 4yuu:O1
18 1y3j:A 77 29 0.1370 0.1299 0.3448 0.68
19 7xcm:A 494 32 0.1781 0.0263 0.4062 2.5 7xcm:B, 7xcm:C, 7xcm:D, 7xcm:E, 7xcm:F, 7xcn:A, 7xcn:B, 7xcn:C, 7xcn:D, 7xcn:E, 7xcn:F
20 5t7l:A 68 52 0.1644 0.1765 0.2308 5.0 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
21 5hnf:A 280 50 0.1918 0.0500 0.2800 6.9 5hlt:B, 5hlt:A, 5hnh:A, 2vla:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218