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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGQIKVLYANKETNSTTNTIRPWLKVVNTGSSSIDLSRVTIRYWYTVDGDRAQSAISDWAQIGASNVTFKFVKLSSSVSG
ADYYLEIGFKSGAGQLQPGKDTGEIQIRFNKSDWSNYNQGNDWSWLQSMTSYGENVKVTAYIDGVLVWGQEPS

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d5b:B 154 153 1.0000 0.9935 1.0000 1.03e-109 6d5b:A, 6d5b:C, 6d5b:D, 6d5b:E, 6d5b:F, 6d5b:G, 6d5b:H, 6d5b:I, 6d5b:J, 6d5b:K, 6d5b:L
2 4jo5:A 170 161 0.5229 0.4706 0.4969 9.17e-43 4b9f:A, 4b9f:B, 1nbc:A, 1nbc:B
3 3zqw:A 153 149 0.4641 0.4641 0.4765 1.09e-42 3zu8:A, 3zuc:A
4 4b97:A 151 151 0.4314 0.4371 0.4371 4.52e-39
5 2wo4:A 159 149 0.3725 0.3585 0.3826 2.43e-30 2wnx:A, 2wob:A, 2wob:C, 2wob:E
6 6sl4:A 150 149 0.3660 0.3733 0.3758 3.36e-29 6sl4:B, 6sl4:C
7 1g43:A 160 160 0.3791 0.3625 0.3625 1.48e-27
8 4b9p:A 166 162 0.3791 0.3494 0.3580 8.84e-23
9 3zqx:A 146 149 0.3203 0.3356 0.3289 9.33e-22
10 4b9c:A 150 131 0.3072 0.3133 0.3588 3.27e-15
11 4b96:A 151 150 0.3137 0.3179 0.3200 9.97e-15
12 1js4:A 605 117 0.1961 0.0496 0.2564 7.70e-04 1js4:B, 1tf4:A, 1tf4:B, 3tf4:A, 3tf4:B, 4tf4:A, 4tf4:B
13 2xfg:B 172 76 0.1699 0.1512 0.3421 0.013
14 8u49:A 615 74 0.1569 0.0390 0.3243 0.41 8u4a:A, 8u4f:A
15 4ni3:B 583 53 0.0915 0.0240 0.2642 8.3 4ni3:A, 4psr:A, 4psr:B
16 6kbn:C 504 31 0.0719 0.0218 0.3548 8.8 6kbm:A, 6kbn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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