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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGIDPKRFGKVAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHGGYGENGQIQG
ALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYAARAQDIVAKLGVPLFVKPASEGSSVAVEKV
KSADALPAALEEAAKHDKIVIVEKSIEGGGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAE
FKRIARRAFDVLGCTDWGRADFMLDAAGNPYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVLSLTLD

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5nri:A 311 311 1.0000 1.0000 1.0000 0.0 5nrh:A, 5nrh:B, 5nri:B
2 4c5a:A 306 302 0.4887 0.4967 0.5033 1.41e-102 4c5a:B, 4c5b:A, 4c5b:B, 4c5c:A, 4c5c:B, 2dln:A, 1iov:A, 1iow:A
3 8evy:B 317 304 0.5241 0.5142 0.5362 7.84e-100 8evy:A, 8evy:C, 8evz:A, 8evz:B, 8evz:C
4 5bpf:C 306 302 0.4984 0.5065 0.5132 2.56e-96 5bpf:B, 5bpf:D, 5bph:A, 5bph:B, 5bph:C, 5bph:D, 5c1o:A, 5c1o:B, 5c1o:C, 5c1o:D, 5c1p:B, 5c1p:C, 5c1p:D
5 8evx:B 305 307 0.3859 0.3934 0.3909 7.44e-53
6 3r5x:D 306 302 0.3569 0.3627 0.3675 7.54e-51 3r5x:A, 3r5x:B
7 8evw:B 326 329 0.3826 0.3650 0.3617 5.35e-49 8evw:A, 8evx:A
8 4fu0:A 343 341 0.3376 0.3061 0.3079 1.73e-43 4fu0:B
9 3i12:A 360 350 0.3698 0.3194 0.3286 1.28e-41 3i12:B, 3i12:C, 3i12:D, 3q1k:A, 3q1k:B, 3q1k:C, 3q1k:D
10 6u1d:B 326 334 0.3441 0.3282 0.3204 8.64e-39 6u1d:A, 6u1e:A, 6u1e:B, 6u1f:A, 6u1f:B, 6u1g:A, 6u1g:B, 6u1h:A, 6u1h:B, 6u1h:C, 6u1i:C, 6u1j:A, 6u1j:C, 6u1k:A, 6u1k:B, 6u1k:C, 6u1k:D, 2yzm:A, 2yzm:B, 2yzm:C, 2yzn:A, 2yzn:B, 2yzn:C, 2zdg:A, 2zdg:B, 2zdg:C, 2zdg:D, 2zdh:A, 2zdh:B, 2zdh:C, 2zdh:D, 2zdq:A, 2zdq:B
11 7u56:A 346 345 0.3408 0.3064 0.3072 3.36e-37 7u56:B
12 3r5x:C 284 301 0.3119 0.3415 0.3223 3.66e-37
13 3rfc:A 344 345 0.3633 0.3285 0.3275 9.77e-37 4l1k:A, 4me6:A, 3r5f:A
14 1e4e:A 341 348 0.3087 0.2815 0.2759 1.77e-36 1e4e:B
15 8fff:A 351 251 0.2572 0.2279 0.3187 1.18e-35 2i80:A, 2i80:B, 2i8c:A, 2i8c:B, 7u9k:B, 7u9k:A
16 3se7:C 331 243 0.2508 0.2356 0.3210 2.23e-30 3se7:A, 3se7:B, 3se7:D, 3se7:E, 3se7:F
17 1ehi:A 360 267 0.2733 0.2361 0.3184 1.73e-29
18 6u1h:D 305 328 0.3183 0.3246 0.3018 4.34e-29 6u1i:A
19 3n8d:B 334 326 0.2733 0.2545 0.2607 7.42e-26 3n8d:A
20 6ll9:B 266 315 0.2637 0.3083 0.2603 3.64e-10
21 7lg5:A 871 133 0.1318 0.0471 0.3083 1.50e-04 7lg5:B, 7lg5:C, 7lg5:D, 7lgj:A, 7lgj:B, 7lgj:C, 7lgj:D, 7lgq:A, 7lgq:B, 7lgq:C, 7lgq:D, 7txu:A, 7txu:B, 7txu:C, 7txu:D, 7txv:A, 7txv:B, 7txv:C, 7txv:D
22 7kct:A 453 226 0.1801 0.1236 0.2478 5.05e-04 7kbl:A, 7kbl:B, 7kc7:A, 7kct:B
23 3ouu:A 446 252 0.1929 0.1345 0.2381 0.003 3ouu:B, 3ouz:A, 3ouz:B
24 7wae:B 877 123 0.1254 0.0445 0.3171 0.014 7wad:A, 7wad:B, 7wad:C, 7wad:D, 7wae:D, 7wae:A, 7wae:C, 7waf:A, 7waf:C, 7waf:D, 7waf:B
25 2dwc:B 409 163 0.1383 0.1051 0.2638 0.038 2dwc:A
26 8fxi:C 630 151 0.1318 0.0651 0.2715 0.062 8fxi:D
27 7ybu:A 670 226 0.1608 0.0746 0.2212 0.065 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
28 4rzq:A 422 141 0.1158 0.0853 0.2553 0.12 4mv6:A, 4mv7:A, 4mv9:A
29 3n6r:G 646 222 0.1672 0.0805 0.2342 0.15 3n6r:I, 3n6r:K
30 6ojh:A 445 147 0.1158 0.0809 0.2449 0.17 4mv1:A, 4mv3:A, 4mv4:A, 4mv8:A, 6oi8:A
31 3vot:A 411 216 0.1608 0.1217 0.2315 0.26 3vot:B
32 3vmm:A 471 251 0.1608 0.1062 0.1992 0.27 3wnz:A, 3wo0:A, 3wo1:A
33 3aw8:A 360 67 0.0611 0.0528 0.2836 0.29 3aw8:B
34 8hz5:A 350 33 0.0450 0.0400 0.4242 0.37
35 5uam:A 440 43 0.0514 0.0364 0.3721 0.61 5uam:B, 5uas:A, 5uas:B
36 1eyz:A 389 152 0.1286 0.1028 0.2632 2.3 1eyz:B, 1ez1:A, 1ez1:B, 1kj8:A, 1kj8:B, 1kj9:A, 1kj9:B, 1kji:A, 1kji:B, 1kjj:A, 1kjj:B, 1kjq:A, 1kjq:B
37 4zwu:A 435 61 0.0740 0.0529 0.3770 3.2 3l24:A, 3l7g:A, 4zwo:A, 4zwo:B, 4zwp:A, 4zwp:B, 4zwu:B
38 3l24:B 417 61 0.0740 0.0552 0.3770 3.3 3l24:C, 3l7g:B, 3l7g:C
39 3gzc:A 403 85 0.0643 0.0496 0.2353 4.2 3gzc:B, 3gzd:A, 3gzd:B, 3gzd:C, 3gzd:D
40 5j72:A 638 130 0.0932 0.0455 0.2231 5.4 5j72:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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