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BioLiP
>protein
SGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRS
CPEHPAD

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ywr:B 87 87 1.0000 1.0000 1.0000 2.23e-61
2 2kiz:A 69 40 0.1954 0.2464 0.4250 1.26e-08 5lg0:A, 5lg7:A, 7p2k:A
3 7r70:A 150 40 0.1839 0.1067 0.4000 6.64e-08 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
4 6a3z:A 56 39 0.2184 0.3393 0.4872 9.06e-08
5 7bvw:A 79 56 0.2414 0.2658 0.3750 5.43e-07 7bvw:B
6 6w7z:B 71 55 0.2184 0.2676 0.3455 6.07e-07 6w9a:B, 6w9a:D, 6w9d:B, 6w9d:E, 6w9d:H
7 2ect:A 78 40 0.1954 0.2179 0.4250 1.13e-06
8 5d0m:C 60 44 0.1954 0.2833 0.3864 2.45e-06 5ulh:C, 5ulk:C
9 4v3k:C 75 55 0.1839 0.2133 0.2909 5.98e-06 7ojx:A, 4v3k:F, 4v3l:C
10 1x4j:A 75 55 0.1839 0.2133 0.2909 6.17e-06
11 2l0b:A 91 53 0.2069 0.1978 0.3396 1.97e-05
12 5zbu:A 74 40 0.1954 0.2297 0.4250 3.08e-05 5zbu:D, 5zc4:A, 5zc4:D
13 2ep4:A 74 39 0.1609 0.1892 0.3590 1.07e-04
14 6f98:A 78 62 0.2414 0.2692 0.3387 1.40e-04
15 2lxh:C 58 46 0.1839 0.2759 0.3478 3.28e-04 2lxp:C
16 4lad:B 69 40 0.1724 0.2174 0.3750 3.75e-04
17 1iym:A 55 44 0.1954 0.3091 0.3864 4.17e-04
18 2ecn:A 70 43 0.1954 0.2429 0.3953 0.053 5xek:A
19 3cc2:R 150 42 0.1609 0.0933 0.3333 0.22 3cc4:R, 3cc7:R, 3cce:R, 3ccj:R, 3ccl:R, 3ccm:R, 3ccq:R, 3ccr:R, 3ccs:R, 3ccu:R, 3ccv:R, 3cd6:R, 3cma:R, 3cme:R, 3cpw:Q, 3cxc:Q, 1ffk:O, 3g4s:R, 3g6e:R, 3g71:R, 3i55:R, 3i56:R, 1jj2:Q, 1k73:S, 1k8a:S, 1k9m:S, 1kc8:S, 1kd1:S, 1kqs:Q, 1m1k:S, 1m90:S, 1n8r:S, 1nji:S, 2otj:R, 2otl:R, 3ow2:Q, 1q7y:S, 1q81:S, 1q82:S, 1q86:S, 2qa4:R, 2qex:R, 1qvf:Q, 1qvg:Q, 1s72:R, 4v9f:R, 1vq4:R, 1vq5:R, 1vq6:R, 1vq7:R, 1vq8:R, 1vq9:R, 1vqk:R, 1vql:R, 1vqm:R, 1vqn:R, 1vqo:R, 1vqp:R, 1w2b:Q, 1yhq:R, 1yi2:R, 1yij:R, 1yit:R, 1yj9:R, 1yjn:R, 1yjw:R
20 1chc:A 68 42 0.1839 0.2353 0.3810 0.26
21 2ecm:A 55 46 0.1494 0.2364 0.2826 0.30
22 4orh:H 142 53 0.1954 0.1197 0.3208 0.42 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
23 8ffz:A 314 46 0.1954 0.0541 0.3696 0.70
24 6sei:A 276 54 0.2069 0.0652 0.3333 0.88 6sei:C
25 6ll9:B 266 37 0.1494 0.0489 0.3514 1.1
26 6gnc:A 287 34 0.1609 0.0488 0.4118 1.3
27 8adl:A 633 46 0.2069 0.0284 0.3913 2.1 8adl:I
28 5d1l:B 111 30 0.1149 0.0901 0.3333 2.2 5d1k:B, 5d1m:B
29 7odu:A 129 36 0.1609 0.1085 0.3889 2.8
30 7ynx:A 188 40 0.1494 0.0691 0.3250 3.1 2jrj:A, 7ynx:B
31 5jw7:B 61 41 0.1954 0.2787 0.4146 3.5
32 6wi7:A 206 89 0.2874 0.1214 0.2809 3.8 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
33 6seh:C 252 52 0.2069 0.0714 0.3462 4.3 6seh:A
34 8om2:Z 92 26 0.0920 0.0870 0.3077 4.7 8d8k:Z, 8d8l:Z, 5mrc:ZZ, 5mre:ZZ, 5mrf:ZZ, 8om3:Z, 8om4:Z
35 8b6j:E 245 20 0.1149 0.0408 0.5000 6.5 8b6j:e, 8bqs:E, 8bqs:e, 8gym:qE, 8gym:qe, 8gym:QE, 8gym:Qe, 8gzu:qE, 8gzu:qe, 8gzu:QE, 8gzu:Qe, 7tgh:3E
36 7ste:A 468 47 0.1609 0.0299 0.2979 7.2 8fs4:A, 7sh2:A
37 7yui:B 232 62 0.1839 0.0690 0.2581 7.8 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
38 2djb:A 72 40 0.1724 0.2083 0.3750 9.1
39 8eaz:A 254 62 0.1839 0.0630 0.2581 9.5 8bvl:A, 8bvl:B, 8eaz:B, 7yuj:A, 7yuj:B
40 5edf:A 224 72 0.2069 0.0804 0.2500 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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