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BioLiP
>protein
SGDAGASSTFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSGKKYEDICPSTHNMDVPNIKRCD
YQLIGIIDNYLSLLSDSGDVREDLKEILAKHEAGEEILVTVLNAMSEECAVALKAM

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oyc:11 136 136 1.0000 1.0000 1.0000 1.23e-99
2 8g61:5A 150 144 0.8529 0.7733 0.8056 2.82e-82 8g5y:5A, 8g5z:5A, 8y0w:5
3 7oya:11 138 138 0.8235 0.8116 0.8116 6.33e-79
4 7oyd:t 126 136 0.7868 0.8492 0.7868 1.27e-75
5 5gak:q 154 142 0.6029 0.5325 0.5775 9.93e-60 8aaf:v, 8agt:v, 8agu:v, 8agv:v, 8agx:v, 8agz:v, 8bn3:eI, 5dat:f, 5dc3:f, 5dge:f, 5dgf:f, 8k2d:CE, 5mc6:BT, 7nrc:Ls, 7rr5:5, 6tnu:eI, 8y0u:5
6 4fu4:A 368 71 0.1691 0.0625 0.3239 0.54 830c:A, 830c:B, 456c:A, 456c:B, 4a7b:A, 4a7b:B, 5b5o:A, 5b5o:B, 5b5p:A, 5b5p:B, 5bot:A, 5bot:B, 5boy:A, 5boy:B, 5bpa:A, 5bpa:B, 1cxv:A, 1cxv:B, 2d1n:A, 2d1n:B, 2e2d:A, 3elm:A, 3elm:B, 1eub:A, 1fls:A, 1fm1:A, 4fu4:B, 4fvl:A, 4fvl:B, 4g0d:A, 4g0d:B, 4g0d:C, 4g0d:D, 6hv2:A, 3i7g:A, 3i7g:B, 3i7i:A, 3i7i:B, 4jp4:A, 4jp4:B, 4jpa:A, 4jpa:B, 7ju8:A, 7ju8:B, 3kec:A, 3kec:B, 3kej:A, 3kej:B, 3kek:A, 3kek:B, 3kry:A, 3kry:B, 3kry:C, 3kry:D, 4l19:A, 4l19:B, 3ljz:A, 3ljz:B, 3ljz:C, 3ljz:D, 3o2x:A, 3o2x:B, 3o2x:C, 3o2x:D, 2ow9:A, 2ow9:B, 2ozr:A, 2ozr:B, 2ozr:C, 2ozr:D, 2ozr:E, 2ozr:F, 2ozr:G, 2ozr:H, 1pex:A, 2pjt:A, 2pjt:B, 2pjt:C, 2pjt:D, 3tvc:A, 5uwk:A, 5uwk:B, 5uwl:A, 5uwl:B, 5uwm:A, 5uwm:B, 5uwn:A, 5uwn:B, 5uwn:C, 5uwn:D, 5uwn:E, 3wv1:A, 3wv1:B, 3wv2:A, 3wv2:B, 3wv3:A, 3wv3:B, 1xuc:A, 1xuc:B, 1xud:A, 1xud:B, 1xur:A, 1xur:B, 2yig:A, 2yig:B, 1you:A, 1you:B, 1ztq:A, 1ztq:B, 1ztq:C, 1ztq:D, 3zxh:A, 3zxh:B
7 8ovs:AAA 276 63 0.1471 0.0725 0.3175 1.4 8ovs:BBB
8 7y9g:B 311 57 0.1176 0.0514 0.2807 2.6
9 3gri:B 423 76 0.1250 0.0402 0.2237 3.1 3gri:A
10 7t3p:A 2066 30 0.0809 0.0053 0.3667 3.9 7t3p:B, 7t3p:C, 7t3p:D
11 7tj9:A 1111 35 0.0882 0.0108 0.3429 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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