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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFTPLVVIELAQDVKEETKEWLKNRIIAKKKDGGAQLLFRPLLNKYEQETLENQNLYLVGASKIRMLLGAEAVGLVKECN
DNTMRAFTYRTRQNFKGFDDNNDDFLTMAECQFIIKHELENLRAKDEKMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPL
HDSEALKKLEDTWYTRFALKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPYYLFVWEDYDKYVIFASFNLIW
STVILELWKRGCANMTYRWGTLLMKRKFEEPRPGFHGVLGINSITGKEEPLYPSYKRQLRIYLVSLPFVCLCLYFSLYVM
MIYFDMEVWALGLHENSGSEWTSVLLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCF
ASLFYIAFVLKDMKLLRQSLATLLITSQILNQIMESFLPYWLQRKHGVRVKRKVQALKADIDATLYEQVILEKEMGTYLG
TFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCAL
IGMSPQVNAVFPESKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQM

The query sequence (length=627) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r7x:A 629 627 1.0000 0.9968 1.0000 0.0 5oc9:A, 5oc9:B, 6r65:A, 6r65:B, 6r7x:B, 6r7y:A, 6r7y:B
2 6qm5:A 673 481 0.2121 0.1976 0.2765 1.55e-43 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
3 6oy3:B 594 460 0.1994 0.2104 0.2717 3.94e-40 6oy3:A, 8tpn:A, 8tpn:B, 8tpq:A, 8tpq:B, 8tps:A, 8tps:B, 8tpt:A
4 7rxg:B 650 447 0.1946 0.1877 0.2729 1.04e-39 7rxg:A, 7rxh:A
5 8tpm:B 615 472 0.2073 0.2114 0.2754 3.38e-39 8tpm:A, 8tpo:B, 8tpo:A, 8tpp:A, 8tpp:B, 8tpr:A, 8tpr:B
6 7rx2:B 615 433 0.1850 0.1886 0.2679 2.35e-38 6e0h:B, 6e0h:A, 6e1o:B, 6e1o:A, 7rwj:B, 7rwj:A, 7rx2:A
7 8tpt:B 571 454 0.1962 0.2154 0.2709 7.50e-38
8 8sun:B 743 514 0.2233 0.1884 0.2724 2.56e-37 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
9 7rx3:B 591 457 0.1994 0.2115 0.2735 7.60e-37 7rx3:A, 7rxa:A, 7rxa:B
10 7rxb:A 548 561 0.2265 0.2591 0.2531 2.18e-35 7rxb:B
11 8bc1:A 527 456 0.2010 0.2391 0.2763 4.24e-35 8bc1:B
12 7zk3:A 721 503 0.1850 0.1609 0.2306 7.63e-32 7b5c:A, 7b5c:B, 7b5e:A, 7b5e:B, 5oyb:A, 5oyb:B, 7zk3:B
13 8qzc:A 701 476 0.1834 0.1641 0.2416 4.58e-29 8qzc:B
14 6bgi:A 510 420 0.1563 0.1922 0.2333 1.60e-26 6bgi:B
15 6bgj:A 490 396 0.1531 0.1959 0.2424 6.55e-26 6bgj:B
16 8bc0:B 636 231 0.1116 0.1101 0.3030 5.70e-22 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
17 8bc0:B 636 171 0.0813 0.0802 0.2982 2.32e-12 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
18 8bc0:B 636 32 0.0159 0.0157 0.3125 5.6 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
19 8b8j:A 709 230 0.1116 0.0987 0.3043 5.89e-22 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
20 8b8j:A 709 183 0.0813 0.0719 0.2787 1.42e-11 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
21 8b8j:A 709 35 0.0159 0.0141 0.2857 4.4 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
22 8b8m:B 682 230 0.1100 0.1012 0.3000 4.94e-21
23 8b8m:B 682 183 0.0813 0.0748 0.2787 1.35e-11
24 8b8m:B 682 35 0.0159 0.0147 0.2857 4.5
25 3k70:D 547 55 0.0271 0.0311 0.3091 1.9 3k70:G, 1w36:G
26 5ld2:D 605 55 0.0271 0.0281 0.3091 2.3 8b1t:D, 8b1u:D, 7mr3:D, 6sjb:D, 6sje:D, 6sjf:D, 6sjg:D, 6t2u:D, 6t2v:D
27 6z1p:Bu 559 59 0.0319 0.0358 0.3390 8.1
28 8ipx:g 145 33 0.0239 0.1034 0.4545 9.4 7a01:m2, 8a3d:R, 5aj0:AX, 8b5l:X, 8b6c:X, 9bdl:AL25, 9bdn:AL25, 9bdp:AL25, 8bf9:X, 7bhp:LX, 8bhf:K1, 8bpo:W2, 8btk:BX, 7cpu:LX, 7cpv:LX, 4d5y:X, 4d67:X, 6d90:X, 6d9j:X, 9f1b:BX, 9f1c:BX, 9f1d:BX, 7f5s:LX, 8fkt:LH, 8fku:LH, 8fkv:LH, 8fkw:LH, 8fkx:LH, 8fky:LH, 8fkz:LH, 8fl2:LH, 8fl3:LH, 8fl4:LH, 8fl6:LH, 8fl7:LH, 8fl9:LH, 8fla:LH, 8flb:LH, 8flc:LH, 8fld:LH, 8fle:LH, 8flf:LH, 9fpz:LX, 9fq0:LX, 6frk:X, 6ftg:X, 6fti:X, 6ftj:X, 8g5y:LX, 8g5z:LX, 8g60:LX, 8g61:LX, 8g6j:LX, 8glp:LX, 6gz3:AX, 6gz4:AX, 6gz5:AX, 6hcf:X3, 6hcj:X3, 6hcm:X3, 6hcq:X3, 8idt:g, 8idy:g, 8ie3:g, 8ifd:2R, 8ife:2R, 8ine:g, 8inf:g, 8ink:g, 6ip5:2R, 6ip6:2R, 6ip8:2R, 8ipd:g, 8ipy:g, 8ir1:g, 8ir3:g, 3j7o:X, 3j7p:X, 3j7q:X, 3j7r:X, 3j92:X, 3jag:X, 3jah:X, 3jai:X, 3jaj:X, 3jan:X, 8jdj:c, 8jdk:c, 8jdl:c, 8jdm:c, 8k2c:LX, 5lks:LX, 6lqm:g, 6lsr:g, 6lss:g, 7ls1:R2, 7ls2:R2, 6lu8:g, 5lzs:X, 5lzt:X, 5lzu:X, 5lzv:X, 5lzw:X, 5lzx:X, 5lzy:X, 5lzz:X, 7mdz:X, 6mtb:X, 6mtc:X, 6mtd:X, 6mte:X, 7nfx:X, 7nwg:X3, 7nwh:X, 7nwi:X, 7o7y:BX, 7o7z:BX, 7o80:BX, 7o81:BX, 7obr:X, 8ohd:LX, 8oj0:LX, 8oj5:LX, 8oj8:LX, 6ole:Y, 6olf:Y, 6olg:AX, 6oli:Y, 6olz:AX, 6om0:Y, 6om7:Y, 8ony:LX, 7ow7:R, 7oya:X1, 7oyb:X1, 7oyc:X1, 7oyd:X, 8p2k:BX, 6p5i:AX, 6p5j:AX, 6p5k:AX, 6p5n:AX, 8q7z:BX, 8q87:BX, 8qfd:X, 7qgg:Y, 8qoi:LX, 7qvp:MX, 7qvp:LX, 7qwq:X, 7qwr:X, 7qws:X, 6qzp:LX, 6r5q:X, 6r6g:X, 6r6p:X, 6r7q:X, 8rjb:X, 8rjc:X, 8rjd:X, 8scb:X, 6sgc:X2, 6swa:V, 6sxo:LX, 5t2c:R, 6t59:X3, 7tm3:X, 7toq:AL25, 7tor:AL25, 7tut:X, 7ucj:X, 7uck:X, 4ug0:LX, 4ujc:BX, 4ujd:AX, 4uje:CX, 4v5z:Bs, 4v6x:CX, 6w6l:Y, 6xa1:LX, 7xnx:LX, 7xny:LX, 8xsx:LX, 8xsy:LX, 8xsz:LX, 6y0g:LX, 8y0w:LX, 8y0x:LX, 6y2l:LX, 6y57:LX, 6y6x:LX, 8yoo:LX, 8yop:LX, 6z6l:LX, 6z6m:LX, 6z6n:LX, 7zjw:La, 7zjx:La, 6zm7:LX, 6zme:LX, 6zmi:LX, 6zmo:LX, 6zvk:m2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218