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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCMLLRK
HIEGGFIEKIEQAGLAAIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLPGQD
YKLPPAQDKISPDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRATLPKALLALFAEVKEHRFIPNITTVNGKEYF
YLLELTHLKGEARRFDSLSELLDRFAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEYSENAKEFQLYGELLTANL
YMLKKGDKQAEVINYESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQEEIEYFDQLIQQLSSASPRDI
SEIREELVEGKYLRPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVAARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEA
ATIAAYFSKAKDSSSVPVDYTKIRHVKKPKPGFVTYDSQHTVFVTPDADTVI

The query sequence (length=532) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aqc:R 558 553 0.9962 0.9498 0.9584 0.0 7aqd:R, 7as8:0, 7as9:0, 7asa:0, 7ope:0
2 8s1u:H 518 550 0.9248 0.9498 0.8945 0.0
3 3j92:u 130 128 0.0677 0.2769 0.2812 1.98e-04
4 3mpb:B 227 83 0.0470 0.1101 0.3012 0.091 3kmh:A, 3kmh:B, 3mpb:A
5 7eof:B 181 91 0.0508 0.1492 0.2967 0.40
6 8aaf:a 848 164 0.0733 0.0460 0.2378 0.63 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
7 7l1k:A 149 35 0.0263 0.0940 0.4000 4.5
8 5ggx:D 267 82 0.0508 0.1011 0.3293 4.8 5ggx:A, 5ggx:B, 5ggx:C
9 8rpr:A 338 123 0.0414 0.0651 0.1789 4.9 8ftr:A, 8fts:A, 8ftv:A, 8rww:A, 8rxf:A, 8rxg:A
10 7lxd:A 1190 59 0.0338 0.0151 0.3051 4.9 6v8p:A
11 6dru:A 718 43 0.0282 0.0209 0.3488 5.3 6dru:B
12 3qp5:A 251 70 0.0357 0.0757 0.2714 6.8 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
13 1ojn:A 722 23 0.0226 0.0166 0.5217 7.5 2brp:A, 2brw:A, 2brw:B, 1c82:A, 1egu:A, 1f9g:A, 1loh:A, 1lxk:A, 1n7q:A, 1n7r:A, 1ojm:A, 1ojo:A, 1ojp:A, 1w3y:A
14 1i8q:A 814 39 0.0282 0.0184 0.3846 7.7 1lxm:A
15 6pu0:A 480 97 0.0526 0.0583 0.2887 7.8 6ptz:A
16 4qqq:A 483 132 0.0432 0.0476 0.1742 8.7
17 8sob:A 1005 56 0.0338 0.0179 0.3214 8.7 8soa:A, 8soc:A
18 8sod:A 941 56 0.0338 0.0191 0.3214 8.9 8soe:A
19 7s0t:A 1231 59 0.0338 0.0146 0.3051 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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