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BioLiP
>protein
SEPQRLFFAIDLPAEIREQIIHWRAKHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQ
WLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTR
YTPLKRWALTQ

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ldj:B 175 175 1.0000 0.9771 0.9771 7.27e-123 5ldj:A, 5ldj:C, 5ldj:D, 5ldk:B, 5ldm:A, 5ldm:B, 5ldo:A, 5ldp:A, 5ldp:B, 5ldq:A, 5ldq:B, 5ldq:C, 5ldq:D, 4qak:A, 4qak:B
2 5h7e:A 182 156 0.2924 0.2747 0.3205 1.83e-09
3 8aq2:A 520 122 0.1988 0.0654 0.2787 0.078
4 8har:A 357 114 0.1871 0.0896 0.2807 0.66 8har:B
5 4j8g:B 302 46 0.0936 0.0530 0.3478 5.7 4j8b:A, 4j8g:A
6 9bgr:B 371 24 0.0702 0.0323 0.5000 8.7 9bgr:A
7 1pjq:B 455 72 0.1228 0.0462 0.2917 9.8 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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