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BioLiP
>protein
SEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQPPVSVSAPKYVECLMR
WCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPA
DFGPLLELVMELR

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hjn:A 206 176 0.9827 0.8252 0.9659 7.58e-124 5ncn:A
2 5brk:A 194 172 0.5549 0.4948 0.5581 5.15e-67 5b5v:A, 5b5v:C, 5b5v:B, 5b5v:D, 5b5w:A, 5b6b:A, 5b6b:B, 5b6b:D, 5b6b:F, 5b6b:H, 5b6b:K, 5b6b:M, 5b6b:O, 5brm:A, 5brm:B, 5brm:C, 5brm:D, 5brm:E, 5brm:F, 4j1v:A, 4j1v:C, 4jiz:A, 6mcp:B, 6mcp:D, 6mcq:B, 6mcq:D, 1pi1:A, 5twf:A, 5twf:B, 5twg:A, 5twh:A, 5xqz:A, 5xqz:B
3 5ncm:A 183 168 0.3295 0.3115 0.3393 4.11e-35
4 7k36:H 177 134 0.1908 0.1864 0.2463 1.07e-04
5 5yf4:A 129 132 0.1908 0.2558 0.2500 0.004
6 8hw1:A 241 18 0.0636 0.0456 0.6111 1.8 8hw1:K, 8hw1:B, 8hw1:C, 8hw1:D, 8hw1:E, 8hw1:F, 8hw1:G, 8hw1:H, 8hw1:I, 8hw1:J
7 7edb:A 350 118 0.1676 0.0829 0.2458 2.5 7edb:B
8 5t9g:C 811 27 0.0636 0.0136 0.4074 5.0 5t9g:A, 5t9g:B, 5t9g:D
9 3gfb:A 347 34 0.0578 0.0288 0.2941 7.0 3gfb:B, 3gfb:C, 3gfb:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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